Lewis I I - OmicsDI

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Unknown (4237)
Transcriptomics (265)
Genomics (161)
Proteomics (65)
Metabolomics (42)
Other (3)
Models (2)
Genomic (1)

Organisms

Homo sapiens (173)
Mus musculus (90)
Rattus norvegicus (37)
Caenorhabditis elegans (29)
Geobacter sulfurreducens (12)
Ferroglobus placidus DSM 10642 (8)
Saccharomyces cerevisiae (4)
Ferroglobus placidus (3)
Drosophila melanogaster (3)
Arabidopsis thaliana (3)
Shewanella oneidensis MR-1 (2)
Neurospora crassa (2)
Schistosoma mansoni (2)
Escherichia coli (2)
Danio rerio (2)
Geobacter metallireducens (1)
Thermotoga maritima MSB8 (1)
Methanococcus maripaludis S2 (1)
Bordetella sp. IITR-02 (1)
Rhodopseudomonas palustris (1)
dechlorinating enrichment culture KB-1 (1)
Caldicellulosiruptor saccharolyticus (1)
Nitrosomonas europaea (1)
Brucella melitensis bv. 1 str. 16M (1)
Dehalobacter restrictus (1)
Bacteroides thetaiotaomicron (1)
Macaca mulatta (1)
Acidithiobacillus ferrooxidans (1)
Saccharina latissima (1)
Daphnia magna (1)

Organisms

Mus musculus (10)
Homo sapiens (4)
Escherichia coli (3)
Rattus norvegicus (3)
Ciona intestinalis (1)
Saccharomyces cerevisiae (1)

Repository

biostudies-arrayexpress (284)
EGA (109)
pride (43)
MetaboLights (40)
ENA (23)
MassIVE (21)
geo (10)
GPMDB (3)
BioModels (2)
MetabolomicsWorkbench (2)
dbGaP (1)
PanoramaPublic (1)

Tissue

Cell culture (8)
Muscle (3)
Brain (3)
Cell suspension culture (3)
Blood plasma (3)
Spleen (3)
Epithelial cell (3)
Blood serum (2)
Cell line cell (2)
Kidney (2)
Liver (2)
Blood (2)
Feces (1)
Urine (1)
Lewis lung carcinoma cell (1)
Epicardial adipocyte (1)
Venom gland (1)
Skeletal muscle fiber (1)
Pancreas (1)
Adipose tissue (1)
Early embryonic cell (1)
Heart (1)
Lung (1)
Permanent cell line cell (1)
Monocyte (1)
Blood cell (1)

Disease

Not Available (3)
Breast cancer (3)
Disease free (3)
Cytomegalovirus seropositive (1)
Uninfected (1)
Schizophrenia (1)
Chronic infection with geohelminth ascaris lumbricoides (1)
Obesity (1)
Normal (1)
Irritable bowel syndrome (1)
Interstitial cystitis (1)
Septic shock (1)
Amyotrophic lateral sclerosis type 1 (1)
Stomach cancer (1)
Type 1 diabetes mellitus (1)
Adult respiratory distress syndrome (1)
Influenza (1)
Bacterial sepsis (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (45)
Mass spectrometry (27)
Shotgun proteomics (19)
NMR spectroscopy (13)
SWATH MS (10)
Bottom-up proteomics (9)
Illumina 15K (8)
Data-dependent acquisition (5)
Mass spectrometry assay (3)
ESI (2)
Data-independent acquisition (2)
Gel-based experiment (2)
Top-down proteomics (2)
Illumina CytoSNP, Illumina HumanOmni2.5, ILLUMINA, Illumina 450k, Illumina HiSeq 2000 (1)
ABI_SOLID, Illumina HiSeq 2000, Illumina 450K, AB 5500xl Genetic Analyzer, AB 5500 Genetic Analyzer, ILLUMINA (1)
Illumina ChIP-Sequencing, Illumina MBD-Sequencing, Illumina beadarray, Illumina HiSeq 2500, Illumina MiSeq, Illumina Bisulfite-Sequencing (1)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Affymetrix 6.0 (1)
NMR spectroscopy assay (1)
SomaScan affinity proteomics (1)
Glycoproteomics (1)
Affinity proteomics (1)
DiaPASEF (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (10)
Nuclear Magnetic Resonance (NMR) - (7)
Liquid Chromatography MS - positive - reverse phase (7)
Orbitrap Eclipse (6)
Bruker (6)
Liquid Chromatography MS - positive - hilic (6)
Gas Chromatography MS - positive (5)
Illumina HiSeq 2500 (4)
NextSeq 500 (3)
Instrument (3)
LTQ Orbitrap Velos (3)
Q Exactive (3)
Orbitrap Fusion Lumos (3)
Direct infusion MS - negative (3)
Liquid Chromatography MS - negative - hilic (3)
Beadarray reader (2)
Illumina NovaSeq 6000 (2)
Illumina HiSeq 2000 (2)
Illumina HiSeq 4000 (2)
Orbitrap Fusion (2)
Q Exactive HF (2)
GeneChip Scanner 2500 (1)
Illumina HiSeq 1500 (1)
MicrOTOF-Q II (1)
Synapt G2 HDMS (1)
MaXis (1)
LTQ Orbitrap Elite (1)
Q Exactive Plus (1)
LTQ Orbitrap (1)
Orbitrap Exploris 480 (1)

Publication Date

2011 (54)
2010 (36)
2024 (27)
2012 (27)
2014 (26)
2016 (24)
2015 (23)
2013 (21)
2009 (20)
2022 (19)
2008 (17)
2021 (14)
2007 (13)
2025 (12)
2019 (12)
2023 (11)
2020 (11)
2026 (9)
2018 (9)
2017 (5)
2006 (4)
2005 (3)
2002 (1)

CHEBI ID

CHEBI:140697 (1)
CHEBI:140695 (1)
CHEBI:78797 (1)
CHEBI:140694 (1)
CHEBI:140692 (1)
CHEBI:70991 (1)
CHEBI:70775 (1)
CHEBI:140040 (1)
CHEBI:70771 (1)
CHEBI:140037 (1)
CHEBI:70829 (1)
CHEBI:140034 (1)
CHEBI:71030 (1)
CHEBI:140031 (1)
CHEBI:71021 (1)
CHEBI:140028 (1)
CHEBI:140054 (1)
CHEBI:140024 (1)
CHEBI:140021 (1)
CHEBI:70815 (1)
CHEBI:140018 (1)
CHEBI:140530 (1)
CHEBI:140015 (1)
CHEBI:82899 (1)
CHEBI:140012 (1)
CHEBI:70845 (1)
CHEBI:140009 (1)
CHEBI:140006 (1)
CHEBI:71156 (1)
CHEBI:140003 (1)

Metabolite Name

Leucine (9)
Phenylalanine (8)
Glycine (7)
Alanine (7)
Valine (6)
Valine (6)
Glutamine (6)
Creatine (6)
Acetate (5)
Glutamate (5)
Proline (5)
Phenylalanine (5)
Alanine (5)
Leucine (5)
Lysine (5)
Lactate (5)
Asparagine (5)
Tyrosine (5)
Serine (5)
Linoleic acid (5)
Isoleucine (5)
Creatinine (5)
Hypoxanthine (5)
Serine (4)
Lysine (4)
Tyrosine (4)
Isoleucine (4)
Uracil (4)
Ornithine (4)
Choline (4)

First Public Date

2014 (7)
2019 (3)
2026 (2)
2021 (2)
2018 (2)
2025 (1)
2024 (1)
2023 (1)
2022 (1)
2017 (1)
2016 (1)
2015 (1)

Modelling Approach

Constraint-based model (2)

Lab affiliation

Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (11)
Molecular Biology and the Lewis-Sigler Institute for Integrative Genomics, Princeton University, USA (2)
Mass Spectrometry Core, Van Andel Institute, Grand Rapids, MI, USA (1)
Molecular Biology and Lewis-Sigler Institute for Intergrative Genomics, Princeton University, USA (1)
Department of Laboratory Medicine, Institute of Biomedicine, University of Gothenburg, Sweden. Laboratory of Clinical Chemistry, Sahlgrenska University Hospital, Gothenburg, Sweden (1)
College of Life Sciences, Northwest University, Xi’an 710069, China (1)
Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139 (1)
Institute of Medical Microbiology, University of Zurich (1)
Leibniz Institute on Aging – Fritz Lipmann Institute (FLI (1)
Virginia Commonwealth University Philips Institute for Oral Health Research VCU School of Dentistry Richmond, VA, United States (1)
Head, Angiogenesis and Tumor Microenvironment Lab The Swiss Institute for Experimental Cancer Research (ISREC) School of Life Sciences Ecole Polytechnique Fédérale de Lausanne (EPFL) (Swiss Federal Institute of Technology, Lausanne, Switzerland) (1)
Angiogenesis and Tumor Microenvironment Lab The Swiss Institute for Experimental Cancer Research (ISREC) School of Life Sciences Ecole Polytechnique Fédérale de Lausanne (EPFL) Swiss Federal Institute of Technology, Lausanne, Switzerland (1)
John van Geest Cancer Research Centre Nottingham Trent University Nottingham, UK (1)
Molecular Biophysics Unit, Indian Institute of Science, Bangalore. (1)
Department of Molecular Microbiology, Washington University School of Medicine, St. Louis, MO 63110, USA. (1)
School of Biochemistry, Biomedical Sciences Building, University Walk, University of Bristol NHS Blood and Transplant Filton Bristol (1)
Temple University Lewis Katz School of Medicine, Philadelphia, Pennsylvania, United States (1)
Neufeld and Tamman Cardiovascular Research Institutes, Sheba Medical Center, Sackler School of Medicine, Tel Aviv University, Israel. (1)
CIR, Queen’s Medical Research Institute, University of Edinburgh (1)
REQUIMTE-LAQV, Department of Chemistry and Biochemistry, Faculty of Sciences of the University of Porto, 4169-007 Porto, Portugal (1)
University of Copenhagen, Novo Nordisk Foundation Center for Basic Metabolic Research (1)
School of Natural Sciences, Macquarie University, Sydney, Australia (1)
Biological Mass Spectrometry Lab Department of Translational Medicine (DiMeT) Center for Translational Research on Autoimmune & Allergic Diseases - CAAD University of Piemonte Orientale Corso Trieste 15/A, 28100, Novara, Italy (1)
Department of Neurology, Faculty of Medicine, University of Cologne and University Hospital Cologne, Kerpener Strasse 62, 50937 Cologne, Germany (1)
Mass spectrometry of Biomacromolecules, SILS, Universiteit van Amsterdam, The Netherlands (1)
Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, United States (1)
Leibniz Institute on Aging – Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany (1)
bLaboratoire de Spectrométrie de Masse Bio-organique, Institut Pluridisciplinaire Hubert Curien, UMR7178 CNRS, Université de Strasbourg, Strasbourg, France (1)
Imperial College London (1)
Wageningen University (1)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

Submitter Keywords

FROG (1)

Classification

bacteria (3)

Study type

Transcription profiling by array (191)
ChIP-seq (27)
RNA-seq of coding RNA (27)
Unknown experiment type (7)
Comparative genomic hybridization by array (5)
Methylation profiling by array (5)
RNA-seq of non coding RNA (5)
Genotyping by array (3)
Animal - High-throughput sequencing (2)
Transcription profiling by tiling array (2)
Other (2)
RNA-seq of coding RNA from single cells (2)
Methylation profiling by high throughput sequencing (2)
Baseline (1)
ChIP-chip by tiling array (1)
RIP-seq (1)
RNA-seq of total RNA (1)

Release Date

2023 (477)
2022 (467)
2021 (448)
2025 (422)
2020 (363)
2024 (349)
2019 (293)
2018 (288)
2017 (192)
2016 (192)
2015 (163)
2014 (153)
2011 (132)
2013 (119)
2012 (101)
2010 (88)
2026 (69)
2009 (66)
2008 (48)
2007 (33)
2006 (15)
2005 (13)
2003 (9)
2004 (7)
2001 (7)
2002 (3)
2000 (2)
1998 (1)
1997 (1)

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Untargeted gas chromatography–mass spectrometry-based metabolomics analysis of kidney and liver tissue from the Lewis Polycystic Kidney rat

Polycystic kidney disease (PKD) encompasses a spectrum of inherited disorders that lead to end-stage renal disease (ESRD). There is no cure for PKD and current treatment options are limited to renal replacement therapy and transplantation. A better understanding of the pathobiology of PKD is needed ...

2023-01-26 | MTBLS748 | MetaboLights

DNase I hypersensitivity and algorithmic prediction of TF binding in early pancreatic mES directed differentiation

This dataset uses DNase-seq to profile the genome-wide DNase I hypersensitivity of mES and mES-derived cells along an early pancreatic lineage and provides the locations of putative Transcription Factor (TF) binding sites using the PIQ algorithm. DNase-seq takes advantage of the preferential cutting...

ORGANISM(S): Mus musculus

2014-01-19 | E-GEOD-53776 | biostudies-arrayexpress

Metabolomics-Driven Discovery of an Introduced Species and Two Malaysian Piper betle L. Variants

The differences in pungency of 'sirih' imply the probable occurrence of several variants of Piper betle L. in Malaysia. However, the metabolite profiles underlying the pungency of the different variants remain a subject of further research. The differences in metabolite profiles of selected M...

2022-03-21 | MTBLS2585 | MetaboLights

Fecal microbiota transplantation plus anti-PD-1 immunotherapy in advanced melanoma: a phase I trial

Fecal microbiota transplantation (FMT) represents a potential strategy to overcome resistance to immune checkpoint inhibitors in patients with refractory melanoma; however, the role of FMT in first-line treatment settings has not been evaluated. We conducted a multicenter phase I trial combining ...

2025-02-27 | MTBLS711 | MetaboLights

Transcription profiling of mammary glands from virgin or parous Lewis strain rats

Independent Lewis rat data used to confirm the finding of the main experiment "Protection against Mammary Tumorigenesis in Multiple Rat Strains (experiment E-TABM-197: https://www.ebi.ac.uk/arrayexpress/experiments/E-TABM-197).

ORGANISM(S): Rattus norvegicus

2007-01-31 | E-TABM-198 | biostudies-arrayexpress

Transcription profiling of rat heart from Lewis strain immunized with a peptide of human alpha1A-adrenergic receptor

Gene expression profiles in hearts of Lewis rats immunized with a peptide of human alpha1A-adrenergic receptor. The pathophysiological relevance of chronic autoantibodies against alpha-1A-adrenergic receptor stimulation in rats was investigated. Lewis rats were immunized using synthesized peptides o...

ORGANISM(S): Rattus norvegicus

2010-06-15 | E-TABM-725 | biostudies-arrayexpress

Gene Expression Changes in the Spinal Cords of Lewis Rats with Myelin Basic Protein-Induced Experimental Autoimmune Encephalomyelitis (EAE)

Myelin Basic Protein (MBP) induced experimental autoimmune encephalomyelitis (EAE) in the Lewis rat, produces an an acute weakness, or paralysis of the tail and hind limb ataxia ,weakness or paralysis associated with increased permiability of the blood brain barrier, inflammation and demyelination i...

ORGANISM(S): Rattus norvegicus

2013-04-03 | E-GEOD-39119 | biostudies-arrayexpress

Timecourse analysis of gene expression by murine bone marrow-generated dendritic cells following treatment with Poly I:C

BACKGROUND: Dendritic cells (DC) play a central role in primary immune responses and become potent stimulators of the adaptive immune response after undergoing the critical process of maturation. Understanding the dynamics of DC maturation would provide key insights into this important process. Time...

ORGANISM(S): Mus musculus

2010-08-26 | E-GEOD-21033 | biostudies-arrayexpress

Catalysis by Bidentate Iodine(III)-Based Halogen Donors: Surpassing the Activity of Strong Lewis Acids.

Not available

S-EPMC9132362 | biostudies-literature

Automated glycan assembly of Lewis type I and II oligosaccharide antigens.

Not available

S-EPMC6552968 | biostudies-literature

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