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ProteomicsComparative evaluation of methods for isolating extracellular vesicles from ICC cell culture supernatants: Insights into proteomic and glycomic analysis
Extracellular vesicles (EVs) are specialized nanoscale vesicular structures that act as mediators of intercellular communication, playing crucial roles in the pathological processes of cancers. Aberrant glycosylation is a hallmark of cancer, the analysis of EVs and protein glycosylation provides val...
ORGANISM(S): Homo Sapiens 
2025-03-24 | PXD062160 |
ProteomicsComparative proteomics of three Chinese potato cultivars to improve understanding of potato molecular response to late blight disease
Late blight disease (LBD) caused by the pathogen Phytophthora infestans (PI) is the most devastating disease limiting potato production globally. To better understand potato molecular response to LBD, the proteomics and morphological changes of three potato cultivars: Favorita (FA), Mira (MA), and E...
ORGANISM(S): Solanum Tuberosum 
2019-07-18 | PXD014647 |
TranscriptomicsTranscription profiling of S. cerevisiae to identify Upf1p-associated transcripts in S. cerevisiae
The goal of this experiment was to identify transcripts associated with the S. cerevisiae Upf1 protein. Experiment Overall Design: The RNA population from four independent pairs of Upf1p-TAP and mock affinity selections were analyzed by using Affymetrix Yeast Genome S98 Arrays.
ORGANISM(S): Saccharomyces cerevisiae 
2008-06-16 | E-GEOD-9486 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Saccharomyces cerevisiae nmd2::HIS3 GAL-NMD2 strain
The goal of this set of experiments was to identify transcripts that are differentially expressed upon reactivation of NMD in an nmd2::HIS3 strain by galactose-induced expression of the NMD2 gene. Experiment Overall Design: Yeast strains harboring nmd2::HIS3 and the GAL1-NMD2 allele on a plasmid or ...
ORGANISM(S): Saccharomyces cerevisiae 
2008-06-16 | E-GEOD-9482 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of S. cerevisiae edc3 mutant and wild type cultures
The goal of this experiment is to identify transcripts regulated by Edc3p, an activator of mRNA decapping. Experiment Overall Design: Five independent expression profiling experiments were carried out for isogenic wild-type (HFY114) and edc3Δ (CFY25) strains using Affymetrix Yeast Genome S98 Ar...
ORGANISM(S): Saccharomyces cerevisiae 
2007-10-23 | E-GEOD-6647 | biostudies-arrayexpress
ProteomicsStuberosum - Leaf, SC (Xiaoetal,intjmolsci.2019)
abundance based on Spectral counting, Interaction consistency score: 14.1, Coverage: 15
ORGANISM(S): 4113 
2019-00-00 | 3769969026 | PAXDB
ProteomicsIdentification of cellular proteins interacting with PEDV M protein through APEX2 labeling
Membrane (M) proteins of coronaviruses are the most abundant component of the virus envelope and play crucial roles in virus assembly, virus budding and the regulation of host immunity. To understand more about these functions in the context of PEDV M protein, forty host cell proteins interacting wi...
ORGANISM(S): Sus Scrofa Scrofa 
2021-03-07 | PXD024559 |
ModelsPassos2010_DNAdamage_CellularSenescence
This is the model described in: Feedback between p21 and reactive oxygen production is necessary for cell senescence. Passos JF, Nelson G, Wang C, Richter T, Simillion C, Proctor CJ, Miwa S, Olijslagers S, Hallinan J, Wipat A, Saretzki G, Rudolph KL, Kirkwood TB, von Zglinicki T. ;M...
2024-09-02 | BIOMD0000000287 | BioModels
TranscriptomicsTranscriptome sequencing of naked mole rat, Heterocephalus glaber
Deep sequencing of mRNA from naked mole rat Analysis of ploy(A)+ RNA of different specimens: brain, kidney, liver from new born , 4 years old , 20 years old and 4 years old hypoxia-exposed naked mole rat
ORGANISM(S): Heterocephalus glaber 
2011-10-12 | E-GEOD-30337 | biostudies-arrayexpress
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