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MetabolomicsA systems analysis with “simplified source-sink model” reveals metabolic reprogramming in a pair of source-to-sink organs during early fruit development in tomato by LED light treatments
Tomato (Solanum lycopersicum) is a model crop for studying development regulation and ripening in flesh fruits and vegetables. Supplementary light to maintain the optimal light environment can lead to the stable growth of tomatoes in greenhouses and areas without sufficient daily light integral. Tec...
2018-09-27 | MTBLS699 | MetaboLights
TranscriptomicsGrape berry: control vs late harvest techniques (late harvest, DMR-A, DMR-B)
Transcriptional profiling comparing control berries (sampled at Traditional harvest, TH) with berries sampled after the application of different post-harvest techniques (late-harvest LH; double reasoned maturation-A, DMR-A; double reasoned maturation-B, DMR-B) Comparison of Grape berries subjected t...
ORGANISM(S): Vitis vinifera 
2013-09-01 | E-GEOD-43385 | biostudies-arrayexpress
ProteomicsDynamic regulation of the proteome and lysine acetylome of Chlamydomonas reinhardtii in dependence on light and acetate
Here, we performed a mass spectrometry-based analysis to study lysine acetylation and proteome dynamics in Chlamydomonas under varying growth conditions. Liquid cultures of Chlamydomonas were transferred from mixotrophic (light and acetate as carbon source) to heterotrophic (dark and acetate), or ph...
ORGANISM(S): Chlamydomonas Reinhardtii 
2021-11-19 | PXD025168 | JPOST Repository
TranscriptomicsXanthomonas campestris pv. Campestris 8004 far-red light irradiation and XccBphP overexpression transcriptional analysis
RNA isolation and RNA-Seq: Wild-type Xcc or pXccBphP strains were cultured in far-red light or dark conditions up to logarithmic phase (0.7 to 0.8 OD600) at 28C in PYM broth. Total bacterial RNA was isolated using the MasterPureTM RNA Purification Kit (Epicentre, Illumina). Samples corresponding to ...
ORGANISM(S): Xanthomonas campestris pv. campestris 
2016-12-03 | E-MTAB-4958 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis wild type Col-0, cry1 and hfr1 plants in response to dark and blue light treatment
micrarray profiling on Arabidopsis thaliana col-0, cry1 and hfr1 in response to dark and 1 h blue light treatment
ORGANISM(S): Arabidopsis thaliana 
2008-10-29 | E-MEXP-1784 | biostudies-arrayexpress
ProteomicsArabidopsis thaliana PTM dynamics during dark-light transition
Two proteomics DDA experiments investigating dynamics of post-translational modifications in Arabidopsis thaliana whole leaf rosettes at multiple harvest times around dark to light transition. One experiment regarding acetylation (K) and phosphorylation (STY) after serial enrichment of dimethyl labe...
ORGANISM(S): Arabidopsis Thaliana (mouse-ear Cress) 
2023-07-21 | PXD041832 | JPOST Repository
TranscriptomicsEpigenetic Control of Light-Regulated Gene Expression in Arabidopsis
Although landscapes of several epigenetic marks are now available for Arabidopsis and rice, such profiles remain static and do not provide information about dynamic changes of plant epigenomes in response to developmental or environmental cues. Here we analyzed the effects of light regulation on fou...
ORGANISM(S): Arabidopsis thaliana 
2009-12-30 | E-GEOD-15597 | biostudies-arrayexpress
UnknownPost-Harvest LED Light Irradiation Affects Firmness, Bioactive Substances, and Amino Acid Compositions in Chili Pepper (Capsicum annum L.).
Not available
S-EPMC9455159 | biostudies-literature
ProteomicsPost-harvest strawberry fruit LC-MSMS
To determine the effect of different temperature on strawberry after harvest, physiological indicator analysis and proteomics analysis were conducted on ripened strawberry (‘Sweet Charlie’) fruit stored at 4 °C, 23 °C, and 37 °C (±2) for 10 or 20 days. Results showed that 4 °C maintained a better vi...
ORGANISM(S): Fragaria x ananassa 
2022-02-07 | PXD030184 | Pride
Lc-msms Strawberry 
TranscriptomicsGene Expression Data from Senescent vs Non-senescent Cells in the in Vivo Human Annulus
The presence of senescent cells in the aging/degenerating human disc is now well-recognized. Senescent cells are viable, cannot divide, remain metabolically active and accumulate within the disc over time. Molecular analysis of senescent cells in tissue, however, offers a special challenge since the...
ORGANISM(S): Homo sapiens 
2009-07-15 | E-GEOD-17077 | biostudies-arrayexpress
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