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TranscriptomicsMetabolic pathways for lignin-related aromatic compounds elucidated in a Xanthomonas phytopathogen
Convergent microbial biocatalysis has emerged as a promising approach for the conversion of lignin side-streams into value-added chemicals in recent decades. However, the current knowledge of metabolic pathways directing the bioconversion of lignin-related aromatics is still limited to a few microbi...
ORGANISM(S): Xanthomonas citri subsp. citri 306 
2024-08-19 | GSE252662 | GEO
GenomicsMetabolic pathways for lignin-related aromatic compounds elucidated in a Xanthomonas phytopathogen
Metabolic pathways for lignin-related aromatic compounds elucidated in a Xanthomonas phytopathogen
PRJNA1061583 | ENA
UnknownMolecular simulation of lignin-related aromatic compound permeation through gram-negative bacterial outer membranes.
Not available
S-EPMC9720347 | biostudies-literature
ProteomicsMethyl ketone production by Pseudomonas putida is enhanced by plant-derived amino acids
Methyl ketone production by P. putida with A. thaliana and switchgrass hydrolysates obtained by dilute acid pretreatment led to the identification of plant-derived amino acids, rather than mono-aromatics, as key stimulative components of these hydrolysates. Shotgun proteomics indicated that the amin...
ORGANISM(S): Pseudomonas putida KT2440 
2019-06-27 | PXD012013 | Pride
Lignin-related aromatics  methyl ketones  biomass hydrolysates  protein  amino acids. 
ProteomicsMetabolic characterization of two white-rot fungi in diverse cultivation environments reveals biotechnologically relevant biosynthetic pathways
Two white-rot fungi, Trametes versicolor and Gelatoporia subvermispora, were cultivated in different environments - agitation and static incubation modes and variations in the level of antioxidants - during the conversion of a lignin-related aromatic compound and cellobiose. Both incubation mode and...
ORGANISM(S): Gelatoporia Subvermispora (ncbitaxon:42742) Trametes Versicolor (ncbitaxon:5325) 
2024-08-05 | MSV000095519 | MassIVE
ProteomicsOptimization of a heterologous pathway for protocatechuate catabolism in Escherichia coli
Optimization of a heterologous pathway for protocatechuate catabolism in Escherichia coli
ORGANISM(S): Escherichia Coli (ncbitaxon:562) 
2017-05-30 | MSV000081122 | MassIVE
UnknownAromatic Dimer Dehydrogenases from Novosphingobium aromaticivorans Reduce Monoaromatic Diketones.
Not available
S-EPMC8612281 | biostudies-literature
UnknownConversion and upgrading of syringate by Acinetobacter baylyi ADP1.
Not available
S-EPMC12481942 | biostudies-literature
UnknownEfficient biosynthesis of pinosylvin from lignin-derived cinnamic acid by metabolic engineering of Escherichia coli.
Not available
S-EPMC9743564 | biostudies-literature
UnknownFunctional characterization of a novel <i>p</i>-coumarate 3-hydroxylase from <i>Trametes versicolor</i>.
Not available
S-EPMC12915361 | biostudies-literature
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