Liu Chan C - OmicsDI

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Unknown (1915)
Proteomics (55)
Transcriptomics (35)
Genomics (16)
Metabolomics (8)
Multiomics (1)

Organisms

Homo sapiens (58)
Mus musculus (20)
Arabidopsis thaliana (5)
Oryza sativa (2)
Escherichia coli (2)
Momordica cochinchinensis (2)
Schizosaccharomyces pombe (1)
Oryza sativa Japonica Group (1)
Rattus norvegicus (1)
Danio rerio (1)
Boehmeria tricuspis (1)
Bison (1)
Equus sp. (1)
Eriocheir sinensis (1)
Pseudomonas sp. rDWA119 (1)
Stephanorhinus (1)

Repository

biostudies-arrayexpress (39)
pride (38)
EGA (12)
MassIVE (12)
MetaboLights (8)
iProX (5)

Tissue

Cell culture (6)
Epithelial cell (3)
Mammary gland (2)
Oral squamous cell carcinoma cell (2)
Seed (2)
Blood cell (1)
Blood plasma (1)
Bone (1)
Brain (1)
Cardiac muscle cell (1)
Dentin (1)
Early embryonic cell (1)
Embryo (1)
Heart (1)
Hepatocyte (1)
Liver (1)
Mesenchymal cell (1)
Natural killer cell (1)
Organism form (1)
Permanent cell line cell (1)
Plant cell (1)
Primary cell (1)
Saliva (1)
T cell (1)
Tooth enamel (1)
Urine (1)
Whole body (1)

Disease

Breast cancer (3)
Acute myeloid leukemia (2)
Oral squamous cell carcinoma (2)
Breast Carcinoma (1)
Cardiovascular system disease (1)
Cell type cancer (1)
Kidney disease (1)
Oral cavity cancer (1)
Parkinson's disease (1)
Severe acute respiratory syndrome (1)

Technology Type

Mass Spectrometry (38)
Shotgun proteomics (15)
Bottom-up proteomics (9)
Mass spectrometry (7)
SWATH MS (5)
Data-dependent acquisition (4)
Gel-based experiment (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-independent acquisition (2)
Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (6)
Liquid Chromatography MS - positive - reverse phase (6)
LTQ Orbitrap Velos (5)
Orbitrap Fusion Lumos (5)
LTQ Orbitrap Elite (3)
Illumina HiSeq 2000 (2)
LTQ Orbitrap XL (2)
Q Exactive (2)
6540 Q-TOF LC/MS (Agilent) (2)
Illumina NovaSeq X (1)
Illumina HiSeq 4000 (1)
LTQ Velos (1)
Orbitrap Eclipse (1)
Direct infusion MS - negative (1)
Direct infusion MS - positive (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2025 (11)
2010 (9)
2021 (9)
2026 (8)
2013 (8)
2023 (8)
2012 (7)
2019 (7)
2022 (7)
2024 (6)
2016 (5)
2011 (5)
2020 (4)
2008 (2)
2015 (1)
2014 (1)
2009 (1)
2007 (1)
2018 (1)
2017 (1)

CHEBI ID

CHEBI:16196 (5)
CHEBI:15756 (4)
CHEBI:17351 (4)
CHEBI:27432 (4)
CHEBI:15760 (3)
CHEBI:15843 (3)
CHEBI:16040 (3)
CHEBI:16335 (3)
CHEBI:16704 (3)
CHEBI:16750 (3)
CHEBI:17154 (3)
CHEBI:17490 (3)
CHEBI:17509 (3)
CHEBI:17521 (3)
CHEBI:17596 (3)
CHEBI:17750 (3)
CHEBI:28315 (3)
CHEBI:28837 (3)
CHEBI:28842 (3)
CHEBI:28866 (3)
CHEBI:28875 (3)
CHEBI:30769 (3)
CHEBI:30805 (3)
CHEBI:30813 (3)
CHEBI:32365 (3)
CHEBI:42504 (3)
CHEBI:48131 (3)
CHEBI:53486 (3)
CHEBI:5417 (3)
CHEBI:545959 (3)

Metabolite Name

Adenosine (3)
Guanosine (3)
(R)-3-Hydroxybutyric acid (2)
1-Methyladenosine (2)
3-Methylhistamine (2)
3-Methylhistidine (2)
3-Methylindole (2)
4-Pyridoxic acid (2)
5-Methylcytosine (2)
Adenine (2)
Alpha-N-Phenylacetyl-L-glutamine (2)
Betaine (2)
Biliverdin (2)
Creatinine (2)
Cyclohexylamine (2)
Cytidine (2)
Cytosine (2)
Deoxycytidine (2)
Dopamine (2)
Glucosamine (2)
Glycerophosphocholine (2)
Hypotaurine (2)
Hypoxanthine (2)
Inosine (2)
Isoetharine (2)
L-Carnitine (2)
L-Glutamine (2)
L-Palmitoylcarnitine (2)
L-Phenylalanine (2)
L-Tyrosine (2)

Study type

Transcription profiling by array (19)
RNA-seq of coding RNA (5)
Unknown experiment type (4)
ChIP-seq (2)
DNA-seq (2)
ChIP-chip by tiling array (1)
Transcription profiling by RT-PCR (1)
Comparative genomic hybridization by array (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)
Genotyping by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (240)
2025 (234)
2024 (221)
2021 (213)
2023 (205)
2020 (156)
2018 (130)
2019 (108)
2016 (91)
2017 (82)
2015 (58)
2013 (44)
2026 (42)
2012 (28)
2011 (28)
2014 (27)
2010 (16)
2009 (13)
2008 (8)
2007 (3)
2006 (3)
2004 (1)
2001 (1)
2000 (1)
1997 (1)

Lab affiliation

Department of Medical Biotechnology and Laboratory Science College of Medicine, Chang Gung University, Taoyuan, Taiwan (2)
Faculty of Health Sciences, University of Macau, Macau, China (2)
Harvard medical school (2)
Indiana University School of Medicine (2)
Lung and Vascular Inflammation Section, Laboratory of Allergic Diseases, NIAID/NIH Bethesda, MD 20892, USA (2)
School of biological Sciences, Nanyang Technological University, Singapore 637551 (2)
Analytical Chemistry Lab, Istituto Italiano di Tecnologia, Via Morego 30, 16163, Genova, Italy (1)
Associate Professor Developmental and Regenerative Biology School of Biomedical Sciences Faculty of Medicine The Chinese University of Hong Kong (1)
Baylor College of Medicine (1)
Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia (1)
Chang Gung University Department of Medical Biotechnology and Laboratory Science (1)
College of life science, Shaoxing University, Shaoxing,China (1)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland. (1)
Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, Guangdong, China (1)
Department of Cancer Sciences, Cleveland Clinic, 9500 Euclid Avenue, NE60, Cleveland, OH, 44195, USA. (1)
Department of Health Technology & Informatics (HTI), The Hong Kong Polytechnic University (PolyU) (1)
Department of Medicine, Division of Nephrology, Icahn School of Medicine at Mount Sinai, New York, NY, USA. (1)
Department of Pharmacology, Feinberg School of Medicine, Northwestern University (1)
Department of Translational Hematology and Oncology Research, Taussig Cancer Institute, Cleveland Clinic; Cleveland, OH. (1)
Department of cell biology, Harvard Medical School (1)
Early Detection and Prevention, Translational Genomics Research Institute, Phoenix, AZ  Integrated Mass Spectrometry Shared Resource, City of Hope Comprehensive Cancer Center, Duarte, CA  (lab head) (1)
Head, Department of Biochemistry and Molecular Biology Head, Signalling Network Laboratory Head, Biomedicine Discovery Institute Cancer Program Department of Biochemistry and Molecular Biology Monash University Level 1, Building 77, Clayton Campus 23 Innovation Walk Clayton VIC 3800 Australia (1)
Lundbeck Foundation GeoGenetics Centre, Natural History Museum of Denmark, University of Copenhagen, Denmark (1)
National Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China (1)
Ningbo University (1)
Proteome Exploration Laboratory, California Institute of Technology, Pasadena, CA, USA (1)
School of Biomedical Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong (1)
St. Giles Laboratory of Human Genetics of Infectious Diseases, The Rockefeller University, New York, New York, USA. (1)
State Key Laboratory of Microbial Diversity and Innovative Utilization, Institute of Microbiology, Chinese Academy of Sciences, Beijing (1)
The Chinese University of Hong Kong (1)

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Autocatalytic photoredox Chan-Lam coupling of free diaryl sulfoximines with arylboronic acids.

Not available

S-EPMC7876119 | biostudies-literature

Differential role of sphingomyelin in influenza virus, rhinovirus and SARS-CoV-2 infection of Calu-3 cells

Host cell lipids play a pivotal role in the pathogenesis of respiratory virus infection. However, a direct comparison of the lipidomic profile of influenza virus and rhinovirus infections is lacking. In this study, we first compared the lipid profile of influenza virus and rhinovirus infection in a ...

2022-11-15 | MTBLS2352 | MetaboLights

Targeting c-Myc as a novel approach for hepatocellular carcinoma.

Not available

S-EPMC2999263 | biostudies-literature

Effects of portable air cleaners and A/C unit fans on classroom concentrations of particulate matter in a non-urban elementary school.

Not available

S-EPMC9714748 | biostudies-literature

IRF8-regulated genes in primary CD11 b cells

Transcriptional profiling of IRF8-regulated genes in mouse CD11b-positive primary cells. CD11b-positive cells were isolated from spleens of age-matched wt and IRF8 KO mice, the compared for their gene expression profiles. The objective is to identify genes that are regulated by IRF8 in CD11b-positiv...

ORGANISM(S): Mus musculus

2011-10-19 | E-GEOD-31464 | biostudies-arrayexpress

Internal Ribosome Entry Site RNAs act in trans through an antisense sequence

SINEUPs are antisense long non-coding RNAs (lncRNAs) that increase translation of overlapping mRNAs through the activity of two domains: an embedded SINEB2 sequence UP-regulates translation (Effector Domain) while the antisense region provides target specificity (Binding Domain). In this study, we ...

ORGANISM(S): Homo sapiens (Human)

2025-08-25 | PXD028571 | Pride

Phase I trial of lenalidomide and CCI-779 in patients with relapsed multiple myeloma: evidence for lenalidomide-CCI-779 interaction via P-glycoprotein.

Not available

S-EPMC3164245 | biostudies-literature

DIA-based quantitative proteomic analysis of cold-responsive proteins in Pseudomonas strains

This dataset describes a quantitative proteomic analysis of cold-responsive proteins in Pseudomonas strains. Bacterial cultures were grown under low-temperature (0 °C) and optimal-temperature (28 °C) conditions, and proteins were extracted from cells harvested at the exponential growth phase. Four r...

ORGANISM(S): Pseudomonas sp. rDWA119

2026-09-28 | PXD073896 | Pride

Pseudomonas Dia proteomics Dia-pasef Bacterial proteome Timstof Quantitative proteomics Cold stress

c-Abl Kinase Targets Tight Junction Protein ZO-2 in Regulation of Cell Migration and Morphology.

Not available

S-EPMC12629166 | biostudies-literature

LRH-1 drives hepatocellular carcinoma partially through induction of c-myc and cyclin E1, and suppression of p21.

Not available

S-EPMC6078084 | biostudies-literature

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