Liu Ming M - OmicsDI

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Unknown (454)
Proteomics (72)
Transcriptomics (44)
Metabolomics (20)
Genomics (12)
Models (1)
Multiomics (1)

Organisms

Homo sapiens (64)
Mus musculus (17)
Arabidopsis thaliana (6)
Escherichia coli (5)
Oryza sativa (3)
Danio rerio (2)
Drosophila melanogaster (2)
Mycobacterium tuberculosis H37Rv_2009 (2)
Triticum aestivum (2)
Pseudomonas phage PaP1 (1)
Metarhizium robertsii (1)
Oryza rufipogon (1)
Prunus armeniaca (1)
Citrus reticulata (1)
Musca domestica (1)
Macaca mulatta (1)
Oryza sativa Indica Group (1)
Zea mays (1)
Ovis aries (1)
Oryza sativa Japonica Group (1)
Camellia sinensis var. assamica (1)
Candida albicans (1)
Chlorocebus sabaeus (1)
Mus sp. (1)
Rattus rattus (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Anas platyrhynchos (1)
Glycine max (1)
Nelumbo nucifera (1)
Oreochromis niloticus niloticus (1)

Repository

biostudies-arrayexpress (49)
iProX (38)
pride (28)
MetaboLights (17)
EGA (7)
MassIVE (5)
GNPS (3)
Cell Collective (1)
jPOST (1)

Tissue

Cell culture (7)
Brain (2)
Liver (2)
Melanocyte (2)
T cell (2)
Blood serum (1)
Endosperm (1)
Epithelial cell of alveolus of lung (1)
Epithelial cell of lung (1)
Intestine (1)
Kidney (1)
Leaf (1)
Lung (1)
Lung endothelial cell (1)
Lung macrophage (1)
Macrophage (1)
Permanent cell line cell (1)
Plant cell (1)
Primary cell (1)
Regulation of gastric acid secretion (1)
Seed (1)
Skin (1)
Spleen (1)
Type I pneumocyte (1)
Type II pneumocyte (1)
Whole body (1)

Disease

Melanoma (4)
Diffuse gastric cancer (2)
Squamous cell carcinoma (1)
Alopecia (1)
Amyloidosis (1)
Avian influenza (1)
Disease free (1)
Lipid metabolism disorder (1)
Osteoporosis (1)

Technology Type

Mass Spectrometry (28)
Mass spectrometry (16)
Shotgun proteomics (14)
Bottom-up proteomics (7)
Affinity purification coupled with mass spectrometry proteomics (5)
Gel-based experiment (3)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
NMR spectroscopy (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
MSE (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (7)
Liquid Chromatography MS - negative - reverse phase (6)
Illumina HiSeq 2000 (5)
Q Exactive (2)
Q-Exactive HF (2)
LTQ Orbitrap Elite (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
454 GS 20 (1)
Illumina Genome Analyzer IIx (1)
Illumina NovaSeq X (1)
Illumina HiSeq 4000 (1)
MicrOTOF-Q II (1)
Orbitrap Exploris 240 (1)
LTQ Orbitrap (1)
5975C Series GC/MSD (Agilent) (1)
Agilent 7890 (1)
Gas Chromatography MS - (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
MS Imaging - (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2022 (22)
2021 (15)
2025 (12)
2024 (12)
2012 (10)
2015 (9)
2020 (8)
2019 (7)
2023 (7)
2026 (5)
2016 (5)
2014 (5)
2013 (5)
2011 (4)
2009 (3)
2018 (3)
2017 (3)
2010 (2)
2008 (2)
2006 (1)
2005 (1)

CHEBI ID

CHEBI:16704 (7)
CHEBI:17368 (7)
CHEBI:15891 (6)
CHEBI:16919 (6)
CHEBI:17568 (6)
CHEBI:18089 (6)
CHEBI:28842 (6)
CHEBI:15756 (5)
CHEBI:16015 (5)
CHEBI:16196 (5)
CHEBI:16750 (5)
CHEBI:17775 (5)
CHEBI:18186 (5)
CHEBI:18237 (5)
CHEBI:28044 (5)
CHEBI:30769 (5)
CHEBI:30915 (5)
CHEBI:131924 (4)
CHEBI:15741 (4)
CHEBI:16027 (4)
CHEBI:16040 (4)
CHEBI:16176 (4)
CHEBI:16259 (4)
CHEBI:16335 (4)
CHEBI:16359 (4)
CHEBI:16393 (4)
CHEBI:16424 (4)
CHEBI:16737 (4)
CHEBI:16811 (4)
CHEBI:16870 (4)

Metabolite Name

Creatine (4)
Hippuric acid (4)
Glycerophosphocholine (3)
Guanosine (3)
Octanoylcarnitine (3)
Sphingosine (3)
Uracil (3)
(9R,13R)-1a,1b-dihomo-jasmonic acid (2)
1-Methylhistidine (2)
1-methyladenosine (2)
1-methylguanosine (2)
17-hydroxy stearic acid (2)
2'-deoxycytidine (2)
2-Hydroxycinnamic acid (2)
2-Nonanol (2)
2-Nonanone (2)
2-Phenylethanol (2)
2-Piperidinone (2)
2-amino-1-phenylethanol (2)
2-aminophenol (2)
20-hydroxy-eicosanoic acid (2)
3,4-dihydroxybenzoic acid (2)
3-methoxytyramine (2)
3alpha-Hydroxy-5beta-chola-7,9(11)-dien-24-oic Acid (2)
5-Hydroxy-L-tryptophan (2)
5-L-Glutamyl-L-alanine (2)
5-Methoxyindoleacetate (2)
5-methylcytidine (2)
5-methylcytosine (2)
Acetoin (2)

Study type

Transcription profiling by array (17)
RNA-seq of coding RNA (13)
RNA-seq of non coding RNA (5)
Methylation profiling by array (3)
Methylation profiling by high throughput sequencing (3)
MicroRNA profiling by array (2)
Transcription profiling by SAGE (1)
ChIP-chip by array (1)
Comparative genomic hybridization by array (1)
ChIP-seq (1)
DNA-seq (1)
Genotyping by high throughput sequencing (1)

Release Date

2025 (72)
2023 (62)
2022 (53)
2024 (48)
2021 (34)
2020 (34)
2017 (26)
2019 (22)
2016 (22)
2015 (21)
2026 (19)
2018 (19)
2012 (18)
2014 (17)
2013 (12)
2011 (7)
2010 (5)
2009 (4)
2008 (3)
2005 (2)
2006 (1)
2007 (1)
2004 (1)

Lab affiliation

Institute of Clinical Medicine in National Yang-Ming Chiao Tung University, Taiwan (Muh-Hwa Yang Lab) (3)
Tumor Biology Department Molecular Medicine Program Moffitt Cancer Center Tampa, FL, USA (3)
College of Life Science, Capital Normal University, 100048 Beijing, China (1)
College of Pharmacy, Jinan University, Guangzhou, China (1)
College of Veterinary Medicine, South China Agricultural University, Guangzhou, China (1)
Graduate Institute of Medical Sciences and Department of Biochemistry and Molecular Cell Biology,School of Medicine, College of Medicine, Taipei Medical University, (1)
Guangxi Academy of Fishery Sciences (1)
Guangxi academy of fishery sciences (1)
Institute of Chemistry, Academia Sinica (1)
Institute of Chemistry, Academia Sinica, Taiwan (1)
Key Laboratory of Plant Germplasm Enhancement and Speciality Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, Hubei, China (1)
Key Laboratory of Zoonosis Research, Ministry of Education, Institute of Zoonosis/ College of Veterinary Medicine,Jilin University, Changchun, China. (1)
Metabolomics-Proteomics Research Center, National Yang Ming Chiao Tung University, Taipei 11221, Taiwan (1)
NMPA Key Laboratory for Research and Evaluation of Drug Metabolism & Guangdong Provincial Key Laboratory of New Drug Screening & Guangdong-Hongkong-Macao Joint Laboratory for New Drug Screening, School of Pharmaceutical Sciences, Southern Medical University,Guangzhou 510515, P.R.China (1)
School of Food and Biological Engineering, Hefei University of Technology (1)
School of Life Sciences, The Chinese University of Hong Kong (1)
Shandong Normal University (1)
Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences.Shenzhen 518055，China (1)
The Affiliated Suzhou Hospital of Nanjing Medical University, Gusu School, Nanjing Medical University, Baita west road #16, Suzhou 215001, China. (1)
The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou Municipal Hospital, Gusu School (1)
Tumor Biology Moffitt Cancer Center Tampa, FL, USA (1)
University of North Carolina, Department of Biochemistry and Biophysics (1)
china agricultural university (1)
school of life sciences (1)

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Tang Wang Ming Mu Granule Attenuates Diabetic Retinopathy in Type 2 Diabetes Rats.

Not available

S-EPMC5742249 | biostudies-literature

Surface TREM2 on circulating M-MDSCs as a novel prognostic factor for adults with treatment-naive diffuse large B-cell lymphoma.

Not available

S-EPMC10080769 | biostudies-literature

Network pharmacology and experimental evidence reveal the protective mechanism of Yi-Qi Cong-Ming decoction on age-related hearing loss.

Not available

S-EPMC9359200 | biostudies-literature

The Relative Content and Distribution of Absorbed Volatile Organic Compounds in Rats Administered Asari Radix et Rhizoma Are Different between Powder- and Decoction-Treated Groups

Asari Radix et Rhizoma (ARR) is an important traditional Chinese medicine. Volatile organic compounds (VOCs) are the main active constituents of ARR. Research on the metabolite profile of VOCs and the difference of absorbed constituents in vivo after an administration of ARR decoction and powder wil...

2021-02-01 | MTBLS2053 | MetaboLights

Network Pharmacology-Based Analysis of Xiao-Xu-Ming Decoction on the Treatment of Alzheimer's Disease.

Not available

S-EPMC7774966 | biostudies-literature

Stomatin modulates adipogenesis through ERK pathway and regulates fatty acid uptake and lipid droplet growth

Controlling fatty acid uptake, lipid production and storage, and metabolism of lipid droplets (LDs), is closely related to lipid homeostasis, adipocyte hypertrophy and obesity. We report here that stomatin, a major constituent of lipid rafts, participates in adipogenesis and adipocyte maturation by ...

ORGANISM(S): Mus musculus (Mouse)

2022-07-05 | PXD031866 | Pride

Transcription factor Msn2 dependent gene expression in two entomopathogen fungi, Beauveria bassiana and Metarhizium robertsii under thermal and oxidaitve stresses

Transcription factor Msn2 played crucial roles in mediating fungal stress tolerance, a determinant to the biocontrol potential of fungal entomopathogens. We characterized for the first time the functions of Beauveria bassiana Msn2 (BbMsn2) and Metarhizium robertsii (MrMsn2) by analyzing multi-phenot...

ORGANISM(S): Metarhizium robertsii

2015-02-01 | E-GEOD-40765 | biostudies-arrayexpress

Association of MYO9B gene polymorphisms with inflammatory bowel disease in Chinese Han population.

Not available

S-EPMC4064092 | biostudies-literature

Gallbladder microbial species and host bile acids biosynthesis linked to cholesterol gallstone comparing to pigment individuals

Gallstones are crystalline deposits in the gallbladder that are traditionally classified as cholesterol, pigment or mixed stones based on their composition. Microbiota and host metabolism variances among the different types of gallstones remain largely unclear. Here, the bile and gallstone microb...

2024-03-11 | MTBLS7736 | MetaboLights

Ratios of CD8 T lymphocytes to M-MDSCs (CD8MMR) predict prognosis in patients with untreated DLBCL.

Not available

S-EPMC12796983 | biostudies-literature

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603 Results

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OmicsDI is part of the ELIXIR infrastructure

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