Liver fluke - OmicsDI

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Unknown (385)
Genomics (55)
Proteomics (30)
Transcriptomics (13)
Methylation profiling (1)
Metabolomics (1)

Organisms

Chlamydomonas reinhardtii (28)
Pseudomonas canadensis (28)
Human alphaherpesvirus 1 strain 17 (28)
Marchantia polymorpha subsp. ruderalis (28)
Methylocystis sp. (28)
Exiguobacterium sp. SH31 (28)
Porites pukoensis (28)
Porphyromonas gingivalis W83 (28)
Bothrops insularis (28)
Bothrops jararaca (28)
Bothrops jararacussu (28)
Bothrops cotiara (28)
Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 (28)
Dinosauria (28)
Pseudomonas [fluorescens] SBW25 (28)
Streptomyces coelicolor (28)
Aves (28)
Pseudomonas taiwanensis (28)
Burkholderia ubonensis MSMB22 (28)
Pseudomonas aeruginosa PA103 (28)
Artibeus jamaicensis (28)
Morchella importuna (28)
Homo sapiens (10)
Mus musculus (3)
Schistosoma japonicum (2)
Clonorchis sinensis (2)
Schistosoma mansoni (2)
Fasciola hepatica (2)
Ovis aries (1)
cellular organisms (1)

Organisms

Fasciola hepatica (8)
Opisthorchis viverrini (6)
Dicrocoelium dendriticum (3)
Fasciola gigantica (3)
gut metagenome (2)
Homo sapiens (2)
Fascioloides magna (1)
Bithynia goniomphalos (1)
Opisthorchis felineus (1)
Ovis aries (1)
Mus musculus (1)

Repository

ENA (47)
pride (28)
biostudies-arrayexpress (12)
EGA (5)
geo (5)
jPOST (1)
MassIVE (1)
MetaboLights (1)

Tissue

Egg (2)
Liver (2)
Juvenile (1)
Protein secretion (1)
Peritoneal fluid (1)
Secretory cell (1)
Integument (1)
Hepatic stellate cell (1)
Mesothelial cell (1)
Intestinal epithelial cell (1)
Oocyte (1)
Whole body (1)
Hepatocyte (1)
Epithelial cell (1)
Cell culture (1)

Disease

Fascioliasis (5)
Viral infectious disease (1)
Schistosomiasis (1)
Disease free (1)

Technology Type

Mass Spectrometry (28)
Shotgun proteomics (14)
Gel-based experiment (8)
SWATH MS (4)
Bottom-up proteomics (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
Mass spectrometry (1)
DiaPASEF (1)
Data-independent acquisition (1)

Instrument Platform

Illumina Genome Analyzer II (1)
Q Exactive HF-X (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2022 (8)
2013 (5)
2024 (5)
2015 (4)
2010 (4)
2018 (4)
2016 (3)
2021 (3)
2019 (3)
2026 (2)
2014 (1)
2012 (1)
2009 (1)
2025 (1)
2023 (1)
2020 (1)

CHEBI ID

CHEBI:128477 (1)
CHEBI:12575 (1)
CHEBI:4307 (1)
CHEBI:144365 (1)
CHEBI:50122 (1)
CHEBI:17522 (1)
CHEBI:16069 (1)
CHEBI:14648 (1)
CHEBI:28804 (1)
CHEBI:17396 (1)
CHEBI:63581 (1)
CHEBI:16749 (1)
CHEBI:45744 (1)
CHEBI:15895 (1)
CHEBI:42717 (1)
CHEBI:114444 (1)
CHEBI:50091 (1)
CHEBI:55501 (1)
CHEBI:7101 (1)
CHEBI:17636 (1)
CHEBI:116735 (1)
CHEBI:63931 (1)
CHEBI:40356 (1)
CHEBI:17028 (1)
CHEBI:18047 (1)
CHEBI:16039 (1)
CHEBI:16426 (1)
CHEBI:37051 (1)
CHEBI:27957 (1)
CHEBI:16285 (1)

Metabolite Name

Monomethyl glutaric acid (1)
1-[(1R)-2-[(4-chlorophenyl)methyl]-1-(hydroxymethyl)-7-methoxy-1'-spiro[3,9-dihydro-1H-pyrido[3,4-b]indole-4,4'-piperidine]yl]-1-butanone (1)
L-erythro-biopterin (1)
Isoguanine (1)
Ubiquinone-2 (1)
3-hydroxy-2-methylbutanoic acid (1)
D-2-aminopentanoic acid (1)
Hydroxyacetone (1)
S-sulfo-L-cysteine (1)
N-methyl-6-pyridone-3-carboxamide (1)
Quinaldic acid (1)
Dihydrolipoic acid (1)
D-glucitol (1)
N(6)-acetyl-L-lysine (1)
Sphingomyelin d18:1 (1)
N(6)-methyl-L-lysine (1)
(R)-prunasin (1)
N(6),N(6),N(6)-trimethyl-L-lysine (1)
Imidazol-4-ylacetic acid (1)
D-serine (1)
3-Oxooctanoyl-[acp] (1)
ITP (1)
N-acetyl-L-glutamate(2-) (1)
N(5)-[(Z)-amino(hydroxyimino)methyl]ornithine (1)
Dihydroxyfumaric acid (1)
Daidzein 7-O-beta-D-glucoside (1)
1H-imidazole (1)
Sulfonyldimethane (1)
Glycine betaine (1)
N(pros)-methyl-L-histidine (1)

First Public Date

2024 (9)
2023 (8)
2013 (7)
2014 (6)
2026 (3)
2016 (3)
2022 (2)
2020 (2)
2017 (2)
2015 (2)
2021 (1)
2019 (1)
2018 (1)

Classification

helminths (21)

Study type

Transcription profiling by array (5)
Comparative genomic hybridization by array (2)
RNA-seq of coding RNA (2)
Transcription profiling by SAGE (1)
Methylation profiling by array (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (37)
2020 (36)
2024 (32)
2017 (32)
2023 (31)
2025 (29)
2015 (26)
2021 (26)
2019 (25)
2018 (23)
2014 (18)
2016 (17)
2012 (13)
2013 (9)
2011 (9)
2010 (8)
2009 (8)
2026 (5)
2008 (5)
2007 (3)
2003 (3)
2006 (1)
2004 (1)

Lab affiliation

Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences (2)
Laboratory of Parasitology, Institute of Natural Resources and Agrobiology of Salamanca (IRNASA-CSIC), C/Cordel de Merinas 40-52, 37008 Salamanca, Spain (2)
Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, Brazil (1)
Central European Institute of Technology, Proteomics core facility, Masaryk University, 625 00 Brno, Czech Republic (1)
Guangxi Disease Prevention and Control Center (1)
Laboratory of Helminth Parasites of Zoonotic Importance(ATENEA), Institute of Natural Resources and Agrobiology of Salamanca (IRNASA-CSIC), Spain (lab head) (1)
School of Biological Sciences Medical Biology Centre Queen's University Belfast Belfast, N. Ireland (1)
Veterinary Parasitology Group, Institute of Biological Environmental and Rural Sciences (IBERS), Aberystwyth University, Penglais, Aberystwyth, Ceredigion, SY23 3FL (1)
Professor in Infectious Diseases School of Biological Sciences Medical Biology Centre (MBC) Queen's University Belfast Belfast UK (1)
James Cook University (Australia) (1)
Institute of Biological Environmental and Rural Sciences, Aberystwyth University, Wales UK (1)
School of Biological Sciences, Queen's University Belfast Institute for Global Food Security, Queen's University Belfast (1)
James Cook University (1)
Head of School, Senior Lecturer, School of Biotechnology, Fundamental and Translational Immunology Group Leader Dublin City University, Dublin 9. Ireland (1)
Departament de Bioquímica i Biologia Molecular, Facultat de Ciències Biològiques, Universitat de València, Burjassot (Valencia), Spain (1)
Molecular Parasitology Lab (MPL),Orbsen Building, School of Natural Sciences/Ryan Institute National University of Ireland, Galway, Ireland (1)
Laboratory of Helminth Parasites of Zoonotic Importance(ATENEA), Institute of Natural Resources and Agrobiology of Salamanca (IRNASA-CSIC), Spain (1)
Centro de Biotecnologia Universidade Federal do Rio Grande do Sul (1)
Internal Diseases Clinic, Faculty of Veterinary Medicine, University of Zagreb, Zagreb, Croatia (1)
Molecular Parasitology Lab - Centre for One Health and Ryan Institute, School of Natural Science, National University of Ireland Galway, Galway, Republic of Ireland. (1)
Instituto de Salud Carlos III (1)
Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Aberystwyth SY23 3DA, United Kingdom (1)
Institute of Parasitology, University of Zurich, Zurich, Switzerland (1)
Department of Zoology, School of Natural Sciences, National University of Ireland, Galway. (1)
School of Biological Sciences Queens University Belfast 19 Chlorine Gardens Belfast UK BT9 5DL Queen’s University Belfast (1)
Departmento de Bioquíimica y Biologíia Molecular, Universitat de Valèencia, Burjassot, Valencia, Spain (1)

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Liver proteome of red deer (Cervus elaphus) infected by liver fluke Fascioloides magna

The aim of the current study was to analyse differences in liver proteomes between F. magna infected and control, apparently healthy, red deer using a label-based high- throughput quantitative proteomics approach.

ORGANISM(S): Bos taurus (Bovine)

2023-01-13 | PXD037544 | Pride

Clonorchis sinensis transcriptome

We conducted transcriptome sequencing of Clonorchis sinesis sub-organs (sucker, muscle, ovary and testis) with Illumina sequencing.

ORGANISM(S): Clonorchis sinensis

2013-01-30 | E-MTAB-827 | biostudies-arrayexpress

Monoclonal antibody affinity-enrichment pull-down proteomics for Fasciola hepatica gut-associated proteins

The zoonotic liver fluke Fasciola hepatica is responsible for economic losses to the agriculture industry worldwide. Triclabendazole has been the drug of choice. However, anthelmintic resistance is becoming prevalent with cases of resistance detected globally. This emphasizes the need for alternativ...

ORGANISM(S): Fasciola hepatica (Liver fluke)

2026-06-29 | PXD035194 | Pride

Fasciola hepatica Monoclonal antibody Gut antigen Proteomics Mass spectrometry Pull-down Liver fluke

Apoptosis of cholangiocytes modulated by thioredoxin of carcinogenic liver fluke.

Not available

S-EPMC4508234 | biostudies-literature

Functional Analysis of the Unique Cytochrome P450 of the Liver Fluke Opisthorchis felineus.

Not available

S-EPMC4666407 | biostudies-literature

Evaluation of liver fluke recombinant cathepsin B-1 protease as a serodiagnostic antigen for human opisthorchiasis.

Not available

S-EPMC3230666 | biostudies-literature