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Unknown (4307)
Proteomics (1157)
Genomics (735)
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Other (53)
Methylation profiling (10)
Metabolomics (4)
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Genomic (1)
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Organisms

Homo sapiens (364)
Mus musculus (210)
Drosophila melanogaster (66)
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Saccharomyces cerevisiae (11)
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synthetic construct (6)
Apis mellifera (5)
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Synechocystis sp. PCC 6803 (4)
Mus musculus x Mus spretus (3)
Trypanosoma brucei (3)
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Trypanosoma brucei brucei (3)
Fragilariopsis cylindrus (2)
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Saccharomyces cerevisiae BY4741 (1)
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Francisella tularensis subsp. tularensis SCHU S4 (1)
Strongylocentrotus purpuratus (1)
Bacillus subtilis subsp. subtilis str. 168 (1)
Macaca mulatta (1)
Trypanosoma cruzi (1)
Chlamydomonas reinhardtii (1)
Bacillus cereus (1)

Organisms

Homo sapiens (225)
Mus musculus (121)
Drosophila melanogaster (17)
Rattus norvegicus (6)
Arabidopsis thaliana (6)
Saccharomyces cerevisiae (4)
Xenopus laevis (3)
Pseudomonas putida (3)
Caenorhabditis elegans (3)
Nostoc sp. PCC 7120 = FACHB-418 (2)
Campeiostachys nutans (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Synechocystis sp. PCC 6803 (2)
Ctenomys talarum (1)
Leishmania braziliensis (1)
Spiroplasma eriocheiris (1)
Arecaceae (1)
Persicaria tinctoria (1)
Trypanosoma brucei brucei (1)
Influenza A virus (A/Puerto Rico/8/1934(H1N1)) (1)
Caulobacter vibrioides (1)
Pseudomonas syringae pv. actinidiae (1)
Saccharomyces cerevisiae BY4741 (1)
Escherichia coli O157:H7 (1)
Aliivibrio fischeri (1)
Chlamydia trachomatis (1)
mixed culture (1)
synthetic construct (1)
Schizosaccharomyces pombe (1)
Mycobacterium tuberculosis variant bovis (1)

Repository

pride (961)
ENA (550)
biostudies-arrayexpress (372)
geo (261)
iProX (115)
MassIVE (44)
jPOST (32)
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Tissue

Cell culture (301)
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HCT-116 cell (9)
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Others (1)

Disease

Breast cancer (28)
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Malignant neoplasm of ovary (8)
Plasmodium falciparum malaria (6)
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NA (2)
Normal (2)
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Not applicable (1)
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Cervical cancer (1)
Surgical treatment for rectal cancer (1)
Not Available (1)

Technology Type

Mass Spectrometry (961)
Affinity purification coupled with mass spectrometry proteomics (414)
Shotgun proteomics (314)
Bottom-up proteomics (162)
Data-dependent acquisition (125)
Gel-based experiment (107)
Top-down proteomics (29)
Data-independent acquisition (27)
Chemical cross-linking coupled with mass spectrometry proteomics (24)
SWATH MS (16)
Affinity proteomics (12)
Illumina HiSeq 2000 (5)
Proteogenomics (5)
RNA mass spectrometry (4)
DiaPASEF (4)
SRM/MRM (3)
Mass spectrometry (2)
MSE (2)
All-ion fragmentation (2)
HDMSE (2)
Illumina MiSeq (1)
Glycoproteomics (1)
Mass spectrometry imaging (1)
Immunopeptidomics (1)

Instrument Platform

Illumina HiSeq 2000 (23)
NextSeq 500 (20)
Illumina HiSeq 2500 (17)
Illumina NovaSeq 6000 (13)
Q Exactive (8)
Illumina HiSeq 4000 (7)
Illumina MiSeq (4)
LTQ (4)
LTQ Orbitrap Elite (4)
Orbitrap Eclipse (4)
HiSeq X Ten (3)
Qubit (2)
Illumina Genome Analyzer II (2)
Illumina HiSeq 1000 (2)
Illumina HiSeq 1500 (2)
NextSeq 550 (2)
Sequel IIe (1)
PromethION (1)
Covaris (1)
Covaris S220 (LGC Genomics GmbH), Bioanalyseur 2100 (Agilent), Bravo Platform (Agilent) (1)
Axon GenePix4000B (1)
Model-G2505B US23502366 (1)
Bioanalyzer (1)
Covaris S220, Covaris LE220 (1)
G2565AA DNA microarray scanner [Agilent] (1)
ScanArray Express HT [PerkinElmer] (1)
GenePix 4000B [Axon Instruments] (1)
DNBSEQ-G400 (1)
Illumina HiSeq 3000 (1)
Instrument (1)

Publication Date

2025 (209)
2023 (187)
2026 (171)
2022 (168)
2024 (157)
2021 (137)
2020 (115)
2018 (75)
2019 (72)
2015 (69)
2016 (66)
2014 (62)
2010 (56)
2013 (52)
2017 (46)
2011 (27)
2012 (26)
2009 (12)
2008 (12)
2006 (6)

UNIPROT ID/AC

D4GYQ7_HALVD (1)
D4GZC2_HALVD (1)
D4GX64_HALVD (1)
D4GUI1_HALVD (1)
D4GV96_HALVD (1)
D4GWE4_HALVD (1)
D4GVT4_HALVD (1)
D4GXE9_HALVD (1)
D4GVI6_HALVD (1)
D4GZS2_HALVD (1)
D4GVY6_HALVD (1)
D4GZ32_HALVD (1)
D4GW49_HALVD (1)
D4GVJ1_HALVD (1)
D4GU29_HALVD (1)
D4GU40_HALVD (1)
D4GSF6_HALVD (1)
D4GYV8_HALVD (1)
D4GRU7_HALVD (1)
D4GYW3_HALVD (1)
D4GS14_HALVD (1)
D4GUH7_HALVD (1)
D4GQ51_HALVD (1)
D4GTB5_HALVD (1)
D4GVY7_HALVD (1)
D4GZX4_HALVD (1)
D4GS21_HALVD (1)
D4GUS3_HALVD (1)
D4GZY0_HALVD (1)
D4GXQ1_HALVD (1)

ENSEMBL ID

ENSG00000170477 (1)

CHEBI ID

CHEBI:17521 (2)
CHEBI:16765 (2)
CHEBI:16634 (2)
CHEBI:16119 (2)
CHEBI:16600 (2)
CHEBI:30772 (2)
CHEBI:30838 (2)
CHEBI:15756 (2)
CHEBI:27897 (2)
CHEBI:25017 (2)
CHEBI:32805 (2)
CHEBI:28044 (2)
CHEBI:4712 (1)
CHEBI:80723 (1)
CHEBI:31297 (1)
CHEBI:10086 (1)
CHEBI:80541 (1)
CHEBI:31826 (1)
CHEBI:34985 (1)
CHEBI:34983 (1)
CHEBI:1720 (1)
CHEBI:1182 (1)
CHEBI:79694 (1)
CHEBI:79480 (1)
CHEBI:79904 (1)
CHEBI:79869 (1)
CHEBI:31825 (1)
CHEBI:9390 (1)
CHEBI:7776 (1)
CHEBI:4816 (1)

Metabolite Name

(3beta,4alpha,5alpha)-3-Hydroxy-4-methylcholest-7-ene-4-carboxylic acid (1)
(1S)-1-{(2R,3R,5R)-5-Hydroxy-3-[(3beta,5alpha,13alpha,14beta,17alpha)-3-hydroxy-4,4,14-trimethylandrost-7-en-17-yl]tetrahydro-2-furanyl}-2-methyl-1,2-propanediol (1)
(8alpha,9beta,11beta,14beta,20S,23S,24R)-11,23,24,25-Tetrahydroxydammar-13(17)-en-3-one (1)
1-[(1R,3aS,5aR,5bR,7aR,9S,11aR,11bR,13aR,13bS)-9-Hydroxy-3a-(hydroxymethyl)-5a,5b,8,8,11a-pentamethylicosahydro-1H-cyclopenta[a]chrysen-1-yl]ethanone (1)
Theasapogenol b (1)
(6R)-6-[(1E,3Z,5R,7E,9E,11R,13S,14R,15S)-3-Ethyl-14-hydroxy-5,9,11,13,15-pentamethyl-12-oxo-1,3,7,9-heptadecatetraen-1-yl]-5,6-dihydro-2H-pyran-2-one (1)
E-Tokoferol (1)
Bolandiol dipropionate (1)
(2S)-2-(4-Isobutylphenyl)propanoic acid - L-lysine hydrate (1:1:1) (1)
Yamogenin (1)
(5beta)-14-Hydroxycholest-7-ene-3,6-dione (1)
Metenolone enanthate (1)
10-[(1R,2S)-2-Hexylcyclopropyl]decanoic acid (1)
METHYL OLEATE (1)
(6Z)-17-Methyl-6-octadecenoic acid (1)
Nisobamate (1)
(3beta,5beta,6beta,7alpha,22E,24xi)-5,19-Cycloergost-22-ene-3,6,7-triol (1)
(3beta,6beta,7alpha,22E,24xi)-Ergosta-4,22-diene-3,6,7-triol (1)
(3beta,7beta,22E,24xi)-Ergosta-5,22-diene-3,7,8-triol (1)
(3beta,4alpha,5alpha)-3-Hydroxycholest-7-ene-4-carboxylic acid (1)
(14xi,22R,23R,24S)-22,23-Dihydroxyergost-4-en-3-one (1)
(2S)-2-Aminotridecanoic acid (1)
(3alpha,5beta)-3,17,21-Trihydroxypregnan-20-one (1)
3a,11b,21-Trihydroxy-5b-pregnan-20-one (1)
Drostanolone (1)
(5Z,9alpha,11alpha,13E,15S)-9,11,15-Trihydroxy-15-methylprosta-5,13-dien-1-oic acid (1)
(4aS,8S,8aS)-8-[(3S)-3-Hydroxy-3-methyl-4-penten-1-yl]-4,4,8a-trimethyl-7-methyleneoctahydro-2(1H)-naphthalenone (1)
Acutilol A (1)
(3alpha)-3,20,21-Trihydroxypregnan-11-one (1)
(3alpha,8xi,9xi,10xi,13xi,14xi)-Pregnane-3,11,17,20,21-pentol (1)

First Public Date

2025 (64)
2024 (64)
2023 (52)
2026 (51)
2020 (49)
2014 (46)
2021 (45)
2022 (35)
2018 (33)
2017 (32)
2019 (21)
2016 (19)
2015 (19)
2013 (16)
2011 (2)
2012 (1)
2010 (1)

Classification

bacteria (7)
protozoa (2)
viruses (2)

Modification

N6-dimethyl-L-lysine (4)
4-tetrahydrothiazine-3-carboxylic acid (3)
N6 (2)
79.966331 (1)
-18.010565 (1)
-17.026549 (1)
42.010565 (1)
15.994915 (1)
2x(15)N labeled L-lysine (1)
4x(2)H labeled dimethylated L-lysine (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)

Study status

Completed (1)

Study type

ChIP-seq (102)
Transcription profiling by array (81)
RNA-seq of coding RNA (77)
ChIP-chip by tiling array (34)
Other (15)
Cell line - High-throughput sequencing (9)
Hi-C (7)
ChIP-chip by array (5)
DNA-seq (5)
Methylation profiling by high throughput sequencing (5)
Methylation profiling by array (4)
Unknown experiment type (3)
Animal - High-throughput sequencing (3)
Transcription profiling by tiling array (3)
MNase-seq (2)
Comparative genomic hybridization by array (2)
MicroRNA profiling by array (2)
RNA-seq of non coding RNA (2)
GRO-seq (1)
High-throughput sequencing (1)
Human - One-color microarray (1)
Proteomic profiling by mass spectrometer (1)
CLIP-seq (1)
MBD-seq (1)
ATAC-seq (1)
RIP-seq (1)
CUT&RUN (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)
Interventional (1)

Release Date

2021 (580)
2022 (527)
2023 (445)
2020 (413)
2025 (369)
2024 (358)
2019 (257)
2018 (202)
2016 (193)
2014 (171)
2017 (171)
2015 (170)
2013 (126)
2010 (125)
2012 (115)
2011 (104)
2009 (68)
2008 (61)
2026 (51)
2007 (49)
2006 (26)
2004 (20)
2005 (19)
2003 (15)
2001 (12)
2002 (11)
2000 (10)
1999 (6)
1998 (3)
1997 (1)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (9)
Paris-Saclay Institute of Neuroscience, Team Melki, CNRS, Gif-sur-Yvette, France (8)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (7)
Institute of Functional Epigenetics, Helmholtz Zentrum München, 85764 Neuherberg, Germany. (6)
Drug Discovery Unit Wellcome Centre for Anti-Infectives Research Division of Biological Chemistry and Drug Discovery University of Dundee Dundee, DD1 5EH. UK (5)
Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium (5)
University of York (5)
Head of the Curie Institute Mass Spectrometry Platform (5)
Shanghai Center for Plant Stress Biology, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, China. (4)
EDyP (4)
First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China (3)
Sir William Dunn School of Pathology, University of Oxford (3)
Cancer Science Institute of Singapore (CSI), National University of Singapore (NUS) (3)
Aarhus University, Denmark (3)
Moffitt Cancer Center Tampa, FL, USA (3)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry ( lab head ) (2)
Department of Molecular Machines and Signaling, Max Planck Institute of Biochemistry, 82152 Martinsried, Germany (2)
Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198, Gif-sur-Yvette, France (2)
Department of Microbiology and Molecular Medicine, Faculty of Medicine, University of Geneva, Geneva, CH-1211 Switzerland (2)
Howard Hughes Medical Institute NYU School of Medicine-Smilow Research Center Biochemistry Department (2)
Max Delbruck Center for Molecular Medicine, Robert-Rössle-Str. 10, D-13092 Berlin, Germany (2)
Jinan University, Guangzhou (2)
Head of Proteomics The Francis Crick Institute 1 Midland Road London NW1 1AT U.K. (2)
Sencond Military Medical University (2)
Faculty of Chemistry and Pharmacy, Biochemistry II, Theodor Boveri-Institute, University of Würzburg, Germany (2)
Department of Pharmaceutical Chemistry and Bioanalytics Institute of Pharmacy Martin Luther University Halle-Wittenberg Halle (Saale), Germany (2)
Institute of Medical Biology, Chinese Academy of Medical Science and Peking Union Medical School, Kunming, China. (2)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA (2)
Buchmann Institute of Molecular Life Sciences and Institute of Biophysical Chemistry, Goethe University, Frankfurt am Main, Germany (2)
School of Medicine, Sun Yat-sen University (2)

Location

Australia (1)

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FilaminC pull-down experiment from myotube lysates

This project was designed to identify a difference in the binding affinity of FILIP1 to different FLNc variants. To this end FLNc domain 1-3 and FLNc d18-21 were used as bait for a pull-down analysis.

ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human)

2020-05-25 | PXD017670 | Pride

mir-154 in mouse lung development - pull-down RNA

PRJNA593006 | ENA

RNA pull down experiment for vA-202 (ANAPC1P2) lncRNA

This study aimed to identify protein interaction partners of the lncRNA vA-202 using an RNA pull-down approach followed by mass spectrometry. Biotinylated vA-202 RNA was generated by in vitro transcription incorporating biotin-14-CTP. For each pull-down reaction, 400 µg of whole-cell lysate (in a to...

ORGANISM(S): Homo sapiens (Human)

2026-05-25 | PXD070150 | Pride

Human Rna pull down Orbutrap ms

Pull-down of PTP-tagged EIF4E2 from bloodstream-form Trypanosoma brucei

PRJEB46062 | ENA

HaCaT ACSL4mRNA probe pull-down MS

ACSL4mRNA probe was designed for pull-down experiments in HaCaT lysates

ORGANISM(S): Homo sapiens (Human)

2025-10-13 | PXD052755 | Pride

Hacat acsl4mrna pull-down ms

pull-down of PpSerpin-1 isoforms

proteomic identification of pull-down gel slices of PpSerpin-1 isoforms

ORGANISM(S): Pieris rapae

2023-08-05 | PXD044199 | Pride

Pteromalus puparum Serpin Pull-down Alternative splicing

RNA pull down assay of GST-ZFP36L1 (wildtype and mutant)

PRJNA561512 | ENA

TcRBP40 pull-down ribonomics

RNA pull-down assay.
For the recombinant protein pull-down assays, 50 M-5g of recombinant His-tag TcRBP40 protein were bound to 100 uL of Ni-NTA resin (Qiagen) overnight at 4M-0C. 100 M-5g of total RNA from epimastigotes were incubated with the bound protein in 500 M-5l EMSA buffer at 4M-0C for 2...

ORGANISM(S): Trypanosoma cruzi

2012-06-30 | E-MEXP-3057 | biostudies-arrayexpress

Deep sequencing of HetR-bound DNA reveals novel HetR targets in Anabaena sp. strain PCC 7120

We employed chromatin pull-down and deep sequencing to globally identify HetR DNA targets in vivo at 6 hours after fixed-nitrogen deprivation. We identified novel DNA binding targets of tagged HetR-6xHis and defined a consensus HetR binding site from these HetR target sequences. Chromatin pull down ...

ORGANISM(S): Nostoc sp. PCC 7120

2013-10-31 | E-GEOD-51886 | biostudies-arrayexpress

Mapping microRNA-target interactions in rare cell types with Spy3-AGO2 Pull-down

PRJNA1017897 | ENA

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