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ProteomicsIdentifying lncRNA-protein interactions in hematopoietic progenitor cells by hybridization capture and mass spectrometry
Long non-coding RNAs (lncRNAs) exert regulatory functions in a wide spectrum of biological contexts, and certain regulatory functions involve the formation of RNA-protein complexes. Discovering the structure/function of these complexes may unveil important functional insights. The DDX41 gene encodin...
ORGANISM(S): Mus musculus (Mouse) 
2025-07-17 | PXD062695 | Pride
Lncrna  lncrna-protein interaction  hematopoiesis  mass spectrometry  proteomics  hybridization capturelncrna  lncrna-protein interaction  hematopoiesis  mass spectrometry  proteomics  hybridization capture 
Proteomicssin-lncRNA interactors in senescent fibroblasts MS
sin-lncRNA is a noncoding RNA molecule with a role in cellular senescence. In vitro RNA pulldown of biotynilated sin-lncRNA was performed to identify sin-lncRNA specific protein partners
ORGANISM(S): Homo sapiens (Human) 
2025-04-29 | PXD044718 | Pride
Human fibroblasts Lncrna Ois Lc/ms/ms Senescence 
ProteomicslncRNA-protein interactions in hematopoietic progenitor cells by hybridization capture and mass spectrometry
Long non-coding RNAs (lncRNAs) exert regulatory functions in a wide spectrum of biological contexts, and certain regulatory functions involve the formation of RNA-protein complexes. Discovering the structure/function of these complexes may unveil important functional insights. The DDX41 gene encodin...
ORGANISM(S): Mus musculus (Mouse) 
2025-01-13 | PXD055956 | Pride
Lc/ms Mouse Hypr-ms Rna-protein interaction 
ProteomicsProteomic identification of primate-specific lncRNA LINC01021 interactors via RNA pull-down MS
Long non-coding RNAs (lncRNAs) play critical regulatory roles in primate-specific biological processes, yet many primate-specific lncRNAs and their protein interactors remain poorly characterized. In this study, we focused on primate-specific lncRNAs as potential drivers of protein interactions. Usi...
ORGANISM(S): Homo sapiens (Human) 
2026-06-29 | PXD075354 | Pride
Long non-coding rna Proteomics Lncrna Mass spectrometry Protein-rna interaction Linc01021 Primate-specific lncrna Rna-binding protein Interactome Rbms Rna pull-down 
ProteomicsLncRNA RUS shapes the gene expression program towards neurogenesis
The evolution of brain complexity correlates with an increased expression of long, non-coding (lnc) RNAs in neuronal tissues. Although prominent examples illustrate the potential of lncRNAs to scaffold and target epigenetic regulators to chromatin loci, only few cases have been described to function...
ORGANISM(S): Mus musculus (Mouse) 
2022-06-21 | PXD031664 | Pride
Rna protein interaction 
TranscriptomicsA comprehensive Xist interactome reveals cohesin repulsion and an RNA-directed chromosome conformation
The inactive X chromosome (Xi) serves as a model to understand gene silencing on a global scale. Here, we perform identification of direct RNA interacting proteins? (iDRiP) to isolate a comprehensive protein interactome for Xist, an RNA required for Xi silencing. We discover multiple classes of inte...
ORGANISM(S): Mus musculus 
2015-06-19 | E-GEOD-67516 | biostudies-arrayexpress
GenomicsIdentification of MATR3 RNA-interactors in WT and Charme KO condtion during cardiac development [CLIP-seq]
Identification of MATR3 RNA-interactors in WT and Charme KO condtion during cardiac development [CLIP-seq]
PRJNA827120 | ENA
OtherIdentification of MATR3 RNA-interactors in WT and Charme KO condtion during cardiac development [CLIP-seq]
MATR3 CLIP-seq analysis on embryonal (E15) murine hearts was performed to identify the protein RNA-interactors during murine cardiac development and to characterize the differential binding of the protein in conditon of KO of the lncRNA Charme.
ORGANISM(S): Mus musculus 
2023-03-18 | GSE200877 | GEO
ProteomicsIdentification of RNA-binding protein interactors of duck lncrna (lnc455) using Multiple Oligo-assisted RNA Pulldown with Hybridization followed by Mass Spectrometry (MORPH-MS)
This project used MORPH-MS to identify proteins that interact with a duck lncRNA called lnc455, which is linked to antiviral responses. While lnc455 was predicted to enhance RIG-I/MAVS signaling, its effects appeared to be indirect. Using MORPH-MS, we mapped the lncRNA’s binding partners and uncover...
ORGANISM(S): Gallus gallus (Chicken) 
2026-04-27 | PXD067094 | Pride
Morph-ms Type i ifn Duck Lncrna 
ProteomicsDownregulation of Human-Specific lncRNA TMEM9B-AS1 in Skeletal Muscle of People with Type 2 Diabetes Impacts Ribosomal Biogenesis
Long non-coding RNAs (lncRNAs) are important regulators of skeletal muscle physiology, with altered expression noted in several human diseases including type 2 diabetes. Here we report downregulation of TMEM9B-AS1, a previously uncharacterized lncRNA, in skeletal muscle of men with type 2 diabetes. ...
ORGANISM(S): Homo sapiens (Human) 
2025-04-22 | PXD053490 | Pride
Lc-ms/ms Lncrna interactors Rna-binding proteins 
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