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UnknownImmunodepletion plasma proteomics by tripleTOF 5600 and Orbitrap elite/LTQ-Orbitrap Velos/Q exactive mass spectrometers.
Not available
S-EPMC3817719 | biostudies-literature
ProteomicsglyXtoolMS Example Data Sets - glyXtoolMS: An Open-Source Pipeline for Semiautomated Analysis of Glycopeptide Mass Spectrometry Data
The data sets of human IgG and human fibrinogen are used as test data for the publication of glyXtoolMS (https://github.com/glyXera/glyXtoolMS). GlyXtoolMS is an open-source analysis software for the (semi)automated targeted analysis of glycopeptide mass spectrometry data using OpenMS/TOPPAS as a fr...
ORGANISM(S): Homo sapiens (Human) 
2018-09-24 | PXD009716 | Pride
Glycosylation Glyxtoolms Human immunoglobulin gamma Ltq orbitrap elite Human fibrinogen 
ProteomicsOptimizing chromatographic conditions for orbitrap-based MS platforms
We compared the performance of multidimensional protein identification (MudPIT) on Velos Pro Orbitrap (VPO) and Velos Orbitrap Elite (VOE) mass spectrometers to single dimension reversed phase (RP) chromatography on a Q Exactive Plus (QE+) and an Orbitrap Fusion™ Lumos™ (OFL). Using a digested HeLa...
ORGANISM(S): Homo sapiens (Human) 
2019-03-04 | PXD009875 | Pride
Reproducibility Data-dependent acquisition Chromatography Q exactive Fusion lumos Human Pearson product-moment correlation coefficient Distributed normalized spectral abundance factor Orbitrap Quantitative proteomics Multidimensional protein identification technology 
ProteomicsIdentification of Phosphorylation Sites of Hemocyanin in Penaeus Vannamei Mediated by Casein Kinase II
Detection of Casein Kinase II mediated hemocyanin phosphorylation sites by LTQ-Orbitrap Elite
ORGANISM(S): Penaeus vannamei 
2026-03-23 | PXD032927 | Pride
Penaeus vannamei Hemocyani Phosphorylation site 
ProteomicsBarnacle cyprid cement gland LC-MS/MS
Proteins were extracted from the cement glands of the cypird barnacle Megabalanus volcano. And thenproteins were subjected to in-solution digestion and analyzed by LTQ-Orbitrap Elite coupled to an Easy-nLC.
ORGANISM(S): Megabalanus volcano 
2021-09-08 | PXD012779 | Pride
Barnacle，cyprid，cement gland 
MetabolomicsOptimizing Deconvolution of Chimeric Fragmentation Spectra to reveal molecular structures of complex biological mixtures

Direct infusion mass spectrometry (DI-MS) offers a rapid, high-throughput analysis and, compared to liquid chromatography MS (LC-MS), a different analytical window into the composition of complex biological samples. However, the lack of chromatographic separation in DI-MS results in highly comple...

MTBLS13066 | MetaboLights
ProteomicsA novel phosphorylation site at Ser130 adjacent to the pseudosubstrate domain regulates protein kinase C-δ activity
Protein kinase C over-expressed into rat neonatal myocytes were lysed in 8M Urea, 0.1% SDS and trypsin digested. Peptides were fractionated by SPE-SCX and enriched by TiO2. Phosphopeptides were analyzed by LC/MS on a Thermo LTQ Elite Orbitrap. Raw files were searched using Sorcerer-Sequest and pos...
ORGANISM(S): Rattus norvegicus (Rat) 
2018-10-24 | PXD002536 | Pride
Phosphorylation Pkc Protein kinase c 
ProteomicsDirect evidence of milk consumption from ancient human dental calculus, St Helena
This study investigated the consumption of milk products in the archaeological record, utilizing human dental calculus as a reservoir of dietary proteins from archaeological samples from across Eurasia. Protein extraction and generation of tryptic peptides from dental calculus was performed using a ...
ORGANISM(S): Homo sapiens (Human) 
2015-02-25 | PXD001357 | Pride
Human Beta-lactoglobulin Dental calculus Dental plaque Lc-ms/ms 
MetabolomicsGNPS - Ecological and metabolic implications of the nurse effect of Maihueniopsis camachoi in the Atacama Desert
Untargeted analysis of plant samples of M. camachoi and A. imbricata. Metabolic fingerprints were obtained via an Ultimate 3000 ultra-high-pressure liquid chromatography coupled to an LTQ-Orbitrap Elite mass spectrometer.
ORGANISM(S): Atriplex Imbricata (ncbitaxon:880658) Maihueniopsis Camachoi 
2023-04-19 | MSV000091741 | GNPS
ProteomicsDirect evidence of milk consumption from ancient human dental calculus, UK
This study investigated the consumption of milk products in the archaeological record, utilizing human dental calculus as a reservoir of dietary proteins from archaeological samples from across Eurasia. Protein extraction and generation of tryptic peptides from dental calculus was performed using a ...
ORGANISM(S): Homo sapiens (Human) 
2015-02-26 | PXD001362 | Pride
Human Beta-lactoglobulin Dental calculus Dental plaque Lc-ms/ms 
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