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ProteomicsProteomic analysis of subchloroplastic compartments
Arabidopsis thaliana chlorosplasts extraction followed by subchloroplastic compartments fractionation (envelope, stroma, thylakoids). Afer SDS-PAGE separation and trypsin digestion, analysis of all gel bands twice by LC-MS/MS on a LTQ-FT
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2016-12-23 | PXD000136 | Pride
Sub compartments fractionation Chloroplast Ltq-ft Lc-ms/ms 
ProteomicsProteomic analysis of Mycoplasma hyopneumoniae virulent strain 232
The experiment consists of M.hyp 232 cultures digests analyzed on two mass specs, LTQ Velos Pro and LTQ FT Ultra LTQ Velos Pro: Six cell culture replicates of M.hyo 232 were hydrophobically separated using tree detergents: Digitonin, Tween, and SDS. Each francion, including the insoluble pellet, wa...
ORGANISM(S): Mycoplasma hyopneumoniae (strain 232) 
2018-01-10 | PXD000118 | Pride
Mycoplasma hyopneumoniae 232 ltq velos ft mass spec proteomics 
ProteomicsGlycopeptide identification by LC-MS/MS
Automatic and rapid identification of glycopeptides by nano-uplc-ltq-ft-ms and proteomic search engine
ORGANISM(S): Bos taurus (Bovine) Homo sapiens (Human) 
2016-12-23 | PXD003578 | Pride
Glycopeptide Lc-ms/ms Byonic 
UnknownLogViewer: a software tool to visualize quality control parameters to optimize proteomics experiments using Orbitrap and LTQ-FT mass spectrometers.
Not available
S-EPMC3221448 | biostudies-literature
MetabolomicsGNPS - Moorea producens JHB Metabolome
Crude extracts of Moorea producens JHB (with blank solvent controls), grown under normal conditions or with excess sodium iodide, and run by LCMS on a Thermo LTQ FT and LCQ Advantage, respectively. Isolated pure compound mzXML files from the LTQ FT by direct nanomate injection.
ORGANISM(S): Moorea Producens Jhb 
2015-01-09 | MSV000078990 | GNPS
ProteomicsIdentify secreted proteins in the conditioned medium
Proteins secreted by developing Dictyostelium discoideum cells are analyzed using LTQ-FT Ultra and MS/MS
ORGANISM(S): Dictyosteliida (dictyostelid cellular slime molds) 
2010-05-07 | PRD000204 | Pride
ProteomicsGeLC-MS/MS analysis of cereal aphid saliva
Saliva was collected from c.40,000 diet reared aphids, pooled and concentrated. Samples were coming from 2 aphid species: Metopolophium dirhodum and Sitobion avenae. Proteins were fractionated using SDS PAGE and visible bands were subjected to in gel digestion. Tryptic peptides were analysised on a ...
ORGANISM(S): Sitobion avenae (English grain aphid) Metopolophium dirhodum (Rose grain aphid) 
2013-04-09 | PXD000113 | Pride
Saliva Metopolophium dirhodum Aphids Sitobion avenae Ltq-ft 
Proteomics29RNP kinase idetification - Identification and characterization of chloroplast casein kinase II from Oryza sativa (rice)
The 29-kDa RNA protein (29RNP), which was originally identified in rice etioplasts, has increased phosphorylation levels during de-etiolation. Here, using heparin-sepharose enriched fractions, we identified a chloroplast kinase that phosphorylated 29RNP. The chloroplast kinase phosphorylated the 29R...
ORGANISM(S): Oryza sativa (Rice) 
2015-04-27 | PXD000951 | Pride
29rnp Kinase M/z list inclusion method 
MetabolomicsLipidomic analysis of lipid droplets from murine hepatocytes reveals distinct signatures for nutritional stress
Liver steatosis can be induced by fasting or high-fat diet. We investigated by lipidomic analysis whether such metabolic states are reflected in the lipidome of hepatocyte lipid droplets (LDs) from mice fed normal chow diet (FED), fasted (FAS), or fed a high-fat diet (HFD). LC-MS/MS at levels of lip...
2014-08-19 | MTBLS26 | MetaboLights
MetabolomicsGNPS - Viequeamides Cyclic Depsipeptides from a Rivularia sp.
Paper title: Viequeamide A, a Cytotoxic Member of the Kulolide Superfamily of Cyclic Depsipeptides from a Marine Button Cyanobacterium Author List: Boudreau PD, Byrum T, Liu WT, Dorrestein PC, Gerwick WH. Citation: J Nat Prod. 2012 Sep 28;75(9):1560-70. DOI: 10.1021/np300321b PubMedID: 22924493 Brie...
ORGANISM(S): Rivularia Sp. 
2014-04-16 | MSV000078594 | GNPS
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