Ma Jun J - OmicsDI

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Unknown (8164)
Metabolomics (144)
Proteomics (124)
Transcriptomics (33)
Genomics (27)
Models (3)
Other (2)
Genomic (1)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (67)
Alteromonadales (67)
Bacteria (67)
Canis lupus familiaris (67)
Carya cathayensis (67)
Ectopseudomonas oleovorans CECT 5344 (67)
Ensifer adhaerens (67)
Enterococcus faecalis (67)
Globicatella sanguinis (67)
Halictus scabiosae (67)
Histomonas meleagridis (67)
Human immunodeficiency virus 1 (67)
Homo sapiens (66)
Mus musculus (22)
Escherichia coli (5)
Arabidopsis thaliana (4)
Mycobacterium tuberculosis H37Rv_2009 (2)
Bombyx mori (1)
Pan troglodytes (1)
Bos taurus (1)
Rattus norvegicus (1)
Sus scrofa (1)
Ailuropoda melanoleuca (1)
Chlorocebus sabaeus (1)
Dioscorea esculenta (1)
Drosophila melanogaster (1)
Gossypium hirsutum (1)
Rattus rattus (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Vibrio cholerae O1 biovar El Tor str. N16961 (1)

Organisms

Mus musculus (1)

Repository

MetaboLights (144)
pride (67)
iProX (50)
biostudies-arrayexpress (38)
EGA (20)
MassIVE (5)
BioModels (3)
GPMDB (2)
jPOST (2)
dbGaP (1)
geo (1)
ENA (1)

Tissue

Cell culture (9)
Permanent cell line cell (6)
Epithelial cell (5)
Brain (4)
Blood serum (3)
Leaf (3)
Bone marrow (2)
Cell suspension culture (2)
Heart (2)
Kidney (2)
Anther (1)
Ascites (1)
B cell (1)
Bladder cell (1)
Blood (1)
Colon (1)
Eggshell (1)
Embryonic stem cell (1)
Epithelial cell of cervix (1)
Follicular fluid (1)
Fruit body (1)
Gonad (1)
Liver (1)
Macrophage (1)
Melanocyte (1)
Monocyte (1)
Muscle (1)
Photosynthetic cell (1)
Plant cell (1)
Primary cell (1)

Disease

Melanoma (3)
Not Available (2)
Malignant neoplasm of ovary (2)
Pancreatic cancer (2)
Prostate cancer (1)
Amyotrophic lateral sclerosis (1)
Cardiovascular system disease (1)
Cervix carcinoma (1)
Colon cancer (1)
Disease free (1)
Gallbladder carcinoma (1)
Liver cancer (1)
Urinary bladder cancer (1)

Technology Type

Mass spectrometry (131)
Mass Spectrometry (67)
Shotgun proteomics (45)
NMR spectroscopy (13)
Bottom-up proteomics (10)
Gel-based experiment (7)
Mass spectrometry assay (5)
Affinity purification coupled with mass spectrometry proteomics (5)
Data-dependent acquisition (3)
Data-independent acquisition (2)
SWATH MS (2)
Illumina HumanOmniExpress-12 v1., Illumina HiSeq 2000 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Mass spectrometry imaging (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (46)
Liquid Chromatography MS - negative - reverse phase (42)
Liquid Chromatography MS - positive - hilic (16)
Liquid Chromatography MS - negative - hilic (12)
Gas Chromatography MS - positive (10)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (7)
Liquid Chromatography MS - (6)
Nuclear Magnetic Resonance (NMR) - (6)
Liquid Chromatography MS - positive (6)
Liquid Chromatography MS - negative (5)
Liquid Chromatography MS - alternating - hilic (5)
Liquid Chromatography MS - alternating - reverse phase (5)
Gas Chromatography MS - (4)
Bruker (4)
MS Imaging - (4)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (3)
Gas Chromatography MS - Positive (GC-MS (Positive)) (3)
Nuclear Magnetic Resonance (NMR) (3)
Exactive (Thermo Scientific) (3)
Instrument (2)
Orbitrap Fusion Lumos (2)
Q Exactive HF-X (2)
Q Exactive (2)
UPLC Q-TOF Premier (Waters) (2)
Tandem Gas Chromatography MS - positive (2)
Typhoon TRIO (1)
NextSeq 500 (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion ETD (1)
Q Exactive Plus (1)

Publication Date

2021 (52)
2022 (51)
2023 (39)
2024 (29)
2016 (21)
2020 (16)
2015 (14)
2014 (14)
2017 (11)
2026 (11)
2018 (11)
2019 (10)
2025 (9)
2013 (8)
2010 (5)
2012 (3)
2007 (3)
2005 (1)

CHEBI ID

CHEBI:17368 (46)
CHEBI:30769 (45)
CHEBI:28044 (43)
CHEBI:16335 (43)
CHEBI:27897 (41)
CHEBI:18186 (39)
CHEBI:15428 (39)
CHEBI:15741 (39)
CHEBI:16704 (39)
CHEBI:17568 (38)
CHEBI:25094 (37)
CHEBI:16708 (37)
CHEBI:16750 (37)
CHEBI:16449 (37)
CHEBI:16919 (37)
CHEBI:17822 (36)
CHEBI:6650 (36)
CHEBI:17596 (36)
CHEBI:15756 (36)
CHEBI:16737 (35)
CHEBI:18237 (34)
CHEBI:15891 (34)
CHEBI:26271 (33)
CHEBI:16811 (33)
CHEBI:27266 (33)
CHEBI:30915 (32)
CHEBI:28300 (31)
CHEBI:18257 (31)
CHEBI:17154 (31)
CHEBI:17750 (31)

Metabolite Name

Adenosine (26)
Hypoxanthine (25)
Uracil (22)
Creatine (22)
Adenine (21)
Uridine (21)
Creatinine (21)
Uric acid (18)
Guanosine (18)
L-Arginine (17)
Taurine (17)
Citric acid (17)
Xanthine (17)
Tryptophan (17)
Inosine (17)
Glycine (16)
Cytidine (16)
Betaine (15)
L-Proline (15)
Alanine (15)
Phenylalanine (15)
L-Phenylalanine (15)
Tyrosine (14)
Proline (14)
L-Glutamine (14)
Sucrose (14)
L-Isoleucine (14)
L-Tyrosine (14)
Leucine (13)
Valine (13)

IsPrivate

False (3)

Model Flag

Non Kinetic (1)

First Public Date

2014 (1)

Modelling Approach

Ordinary differential equation model (2)
Constraint-based model (1)

Modification

+3amu) (1)
15.99491 (1)
15.994915 (1)
57.02146 (1)
57.021464 (1)
N6 (1)

Study type

Transcription profiling by array (18)
RNA-seq of coding RNA (8)
ChIP-seq (6)
Methylation profiling by array (2)
Animal - High-throughput sequencing (1)
Genotyping by array (1)
MicroRNA profiling by array (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (1086)
2021 (976)
2023 (971)
2020 (700)
2024 (651)
2025 (603)
2019 (513)
2018 (460)
2017 (402)
2016 (375)
2014 (315)
2015 (294)
2013 (174)
2012 (147)
2011 (142)
2010 (93)
2009 (91)
2008 (62)
2007 (35)
2006 (27)
2005 (24)
2026 (19)
2004 (11)
2003 (8)
2002 (7)
2001 (6)
1999 (4)
2000 (3)
1997 (3)

Lab affiliation

Department of Pharmaceutical Sciences, University at Buffalo, US (3)
University at buffalo, SUNY (3)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (2)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA (2)
Northwest University (2)
1. Istitituto Sperimentale Italiano L. Spallanzani,Milano, Italy; 2. Dipartimento di Scienze Veterinarie e Sanità Pubblica, Università degli Studi di Milano, Milano, Italy. (1)
1Department of Physiology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA (1)
Beijing Tcmages Pharmaceutical Co., Ltd (1)
Bioinformatics Solutions Inc., Waterloo, Ontario, Canada (1)
CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chines Academy of Sciences, Beijing, China. (1)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences Bennett Laboratory Mass Spectrometry & Proteomics (1)
Center for Medical Research & Development, Division of Translational Research, Osaka Medical and Pharmaceutical University, 2-7 Daigaku-machi,Takatsuki, Osaka 569-8686, Japan (1)
Centre for Proteome Research, Institute of Integrative Biology, University of Liverpool (1)
College of Veterinary Medicine, Huazhong Agricultural University, Wuhan 430070, China (1)
Core Facility for Mass Spectrometry & Proteomics Center for Molecular Biology of Heidelberg University Heidelberg, Germany (1)
Cutaneous Oncology/Tumor Biology Moffitt Cancer Center Tampa, FL, USA (1)
Department of Biochemistry and Center for Cancer Research, Purdue University, West Lafayette, Indiana 47907 (1)
Department of Biochemistry and Molecular Biology, the Institute for Medical Research Israel ג€“ Canada, Faculty of Medicine, The Hebrew University of Jerusalem, Jerusalem, Israel, 9112001. (1)
Department of Biochemistry and Molecular and Structural Biology Jozef Stefan Institute Ljubljana, Slovenia (1)
Department of Biology (1)
Department of Chemistry, Chemical Biology Centre and State Key Laboratory of Synthetic Chemistry, The University of Hong Kong (1)
Department of Genetics, The Alexander Silberman Institute of Life Sciences, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Jerusalem, Israel (1)
Department of Immunotechnology (Hus 406), Medicon Village, Lund University, 223 81, Lund, Sweden (1)
Department of Pathology, School of Medicine, Pontificia Universidad Católica de Chile, Santiago, 8330024, Chile (1)
Department of Pharmaceutical Sciences, School of Pharmacy and Pharmaceutical Sciences, University at Buffalo, USA (1)
Department of Pharmaceutical Sciences, School of Pharmacy, University at Buffalo, Buffalo, New York, United States (1)
Department of Pharmaceutical Sciences, School of Pharmacy,SUNY at Buffalo, Buffalo, New York 14221, United States (1)
Department of Pharmaceutical Sciences, University at Buffalo, Buffalo, New York, United State (1)
Department of Pharmaceutical Sciences, University at Buffalo, Buffalo, New York, United States (1)
Department of Pharmaceutical Sciences, University at Buffalo, State University of New York (1)

Tags

xref:PubMed:16098828 (1)

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Failures of nerve regeneration caused by aging or chronic denervation are rescued by restoring Schwann cell c-Jun

After nerve injury, myelin and Remak Schwann cells reprogram to repair cells specialized for regeneration. Normally providing strong regenerative support, these cells fail in aging animals, and during the chronic denervation that results from slow axon growth. This impairs axonal regeneration and ca...

ORGANISM(S): Mus musculus

2020-10-14 | E-MTAB-9640 | biostudies-arrayexpress

CRKL enhances YAP signaling through binding and JNK/JUN pathway activation in liver cancer

Hepatocellular carcinoma (HCC) presents a major health issue due to its rising incidence and limited therapeutic options. The Hippo pathway transducers yes-associated protein (YAP) and WW-domain containing transcription regulator 1 (WWTR1/TAZ) are key regulators of liver tu-morigenesis promoting tum...

ORGANISM(S): Homo sapiens (Human)

2024-11-26 | PXD058235 | Pride

ChIP-Seq analysis of BATF, IRF4, the Jun proteins, and histone modifications in effector CD8+ T cells

The transcription factor BATF is required for Th17 and TFH differentiation. Here, we show that BATF also has a fundamental role in regulating effector CD8+ T cell differentiation. BATF-deficient CD8+ T cells show profound defects in effector expansion and undergo proliferative and metabolic catastr...

ORGANISM(S): Mus musculus

2014-03-02 | E-GEOD-54191 | biostudies-arrayexpress

Influence of Parental and Offspring Dietary Behaviors on the Association of Overweight and Obesity between Two Generations: Results from a Cross-Sectional Analysis of Parent-Offspring Trios in China.

Not available

S-EPMC9658054 | biostudies-literature

Comprehensive lipid analysis of green Arabica coffee beans by LC-HRMS/MS

Lipids play an important role in coffee bean development, coffee brew and in the effects of coffee on human health. They account for around 17% of the dry bean weight and encompass different classes and subclasses, mostly triacylglycerols (TAG) and a minor quantity of phospholipids (PL) and βN-alkan...

2021-11-19 | MTBLS1972 | MetaboLights

PU.1-c-Jun interaction is crucial for PU.1 function in myeloid development.

Not available

S-EPMC9474506 | biostudies-literature

Mitochonic Acid 5 (MA-5) Facilitates ATP Synthase Oligomerization and Cell Survival in Various Mitochondrial Diseases.

Not available

S-EPMC5478234 | biostudies-literature

NFAT5, a constitutively nuclear NFAT protein that does not cooperate with Fos and Jun.

Not available

S-EPMC22056 | biostudies-literature

c-Jun N-terminal kinase promotes stem cell phenotype in triple-negative breast cancer through upregulation of Notch1 via activation of c-Jun.

Not available