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ProteomicsThe extracellular interactome of the human Adenovirus family reveals diverse strategies for immunomodulation
Using a large collection of diverse viral immunomodulatory proteins, and comprehensive human protein microarray libraries, we identify more than 51 virus-host interactions that suggest new immunoregulatory strategies. Full description of this study will be detailed in Martinez-Martin et al., Nat Com...
ORGANISM(S): Human mastadenovirus A Homo sapiens 
2016-03-04 | GSE78518 | GEO
ProteomicsDephosphorylation of astrocyte elevated gene-1 protein upregulates eIF4E expression to promote gastric cancer progression
This project includes raw mass spectrometry data supporting the identification of phosphorylation sites on AEG-1 (MTDH), particularly S426 and T492, in gastric cancer cells（BGC823） under CXCL12 treatment, as well as PPP1R21-interacting proteins including AEG-1 in HEK293T cells. This result supports ...
ORGANISM(S): Homo sapiens (Human) 
2026-07-07 | PXD080675 | Pride
Gastric cancer  phosphorylation  astrocyte elevated gene-1  eukaryocytic translation initiation factor 4e  phosphotase protein 1 regulatory subunit 21  nuclear factor kappa b 
GenomicsSaccharomyces cerevisiae Sko1-HA strain MAP37, W303-1A background
These three replicates were analyzed in "Genomewide identification of Sko1 target promoters reveals a regulatory network that operates in response to osmotic stress in Saccharomyces cerevisiae. ", by Proft M, Gibbons FD, Copeland M, Roth FP, Struhl K; published in Eukaryot Cell. 2005 Aug;4(8):1343-5...
ORGANISM(S): Saccharomyces cerevisiae 
2005-09-21 | GSE3335 | GEO
Genomics
High n-caprylate productivities and specificities from dilute ethanol and acetate: chain elongation with microbiomes to upgrade syngas fermentation products
PRJEB14153 | ENA
ProteomicsIdentification of neoantigens in oesophageal adenocarcinoma
We present data from tissues of seven oesophageal adenocarcinomas of CD4 and CD8 T cell epitopes eluted from the cell surface using mass spectrometry (immunopeptidomics) of presented HLA bound peptides.This dataset forms part of the publication:Nicholas, B., Bailey, A., McCann, K.J., Wood, O., Walke...
ORGANISM(S): Homo sapiens (Human) 
2022-09-27 | PXD031108 | Pride
Human Oesophageal adenocarcinoma Immunopeptidome Hla 
UnknownFrom chaos to tranquillity: a modern approach to the identification, nomenclature and phylogeny of <i>Aspergillus</i>, <i>Penicillium</i> and other <i>Eurotiales</i>, including an updated accepted species list.
Not available
S-EPMC12786731 | biostudies-literature
TranscriptomicsDefining precision probes which differentiate between the activity of type I and type II interferons.
To define probes which differentiate between the activity of type I or type II IFN, a human submandibular gland (HSG) cell line was cultured for 48 hours in the absence or presence of IFNa or IFNg. Gene expression was assayed at 4, 12, 24 or 48 hours and was compared to gene expression in untreated ...
ORGANISM(S): Homo sapiens 
2012-10-08 | E-GEOD-41291 | biostudies-arrayexpress
Methylation profilingEpigenome analysis of apoptotic and control cancer cell lines
Genome wide DNA methylation profiling of four control and cancer cell lines where apoptosis was induced using BH3 mimetics. The Illumina Human MethylationEPIC methylation profiling array was used to obtain DNA methylation profiles across approximately 850,000 CpGs. 8 samples were from treated cells ...
ORGANISM(S): Homo sapiens 
2023-02-07 | GSE207224 | GEO
ProteomicsData from “A biocodicological analysis of the medieval library and archive from Orval Abbey, Belgium.
The dataset contains the first-ever comprehensive biocodicological analysis of medieval library books and chapters using zooarchaeological mass spectrometry (ZooMS). Here, we analyze 68 codices and 59 charters (1490 samples in total) from one single monastic institution, namely the Cistercian abbey ...
ORGANISM(S): Bos taurus (Bovine) Capra hircus x Ovis aries 
2022-02-22 | PXD029196 | Pride
Charters Orval Codices Lc-msms 
Genomics
Freziera phylogenomics: phylogenetic complexity and data artifacts
PRJNA1036580 | ENA
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