Matrisome-associated

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Transcriptomics (527)
Unknown (145)
Proteomics (105)
Genomics (56)
Metabolomics (6)
Multiomics (3)
Other (2)

Organisms

Homo sapiens (293)
Mus musculus (187)
Rattus norvegicus (31)
Sus scrofa (12)
Bos taurus (7)
Canis lupus familiaris (4)
Danio rerio (3)
Notophthalmus viridescens (2)
Bos indicus (2)
Ovis aries (2)
Caenorhabditis elegans (2)
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Bifidobacterium bifidum (1)
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Mammuthus primigenius (1)

Organisms

Homo sapiens (19)
Mus musculus (17)

Repository

biostudies-arrayexpress (509)
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geo (35)
pride (33)
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PeptideAtlas (1)

Tissue

Cell culture (5)
Epithelial cell (4)
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Lung (3)
Extracellular matrix constituent secretion (2)
Macrophage (2)
Pancreas (2)
Others (1)
Adrenal gland (1)
Brain (1)
Breast (1)
Bronchoalveolar lavage (1)
Colon (1)
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Ear (1)
Embryonic fibroblast (1)
Intervertebral disc (1)
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Ovarian follicle layer (1)
Ovary (1)
Pancreatic ductal cell (1)
Placenta (1)
Primary cell (1)
Rectum (1)
Renal artery (1)

Disease

Normal (3)
None (2)
Breast cancer (2)
Colorectal cancer (2)
Disease free (2)
Aortic aneurysm (1)
Emphysema (1)
ER positive breast cancer (1)
Aorta aneurysm (1)
HIV (1)
Dystrophic (1)
Scrapie infected (1)
Cirrhosis (1)
Serous ovarian cancer (1)
Brain cancer (1)
Colon cancer (1)
Glioblastoma (1)
Hypertension (1)
Liver cancer (1)
Pancreatic ductal adenocarcinoma (1)
Placenta disease (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (33)
Shotgun proteomics (20)
Bottom-up proteomics (7)
Data-dependent acquisition (6)
Mass spectrometry (4)
SWATH MS (2)
Top-down proteomics (2)
NMR spectroscopy (1)
Mass spectrometry assay (1)
Data-independent acquisition (1)
Gel-based experiment (1)

Instrument Platform

Q Exactive (11)
Illumina HiSeq 2500 (9)
Illumina NovaSeq 6000 (8)
Illumina HiSeq 2000 (7)
Orbitrap Fusion Lumos (7)
Q Exactive Plus (5)
NextSeq 2000 (4)
Illumina HiSeq 4000 (4)
NextSeq 500 (4)
Orbitrap Eclipse (4)
Orbitrap Fusion (3)
Q Exactive HF (3)
Q Exactive HF-X (3)
LTQ Orbitrap Elite (2)
LTQ Orbitrap Velos (2)
LTQ Velos (2)
10x Chromium (1)
FACS (1)
HiSeq 2000 (1)
C1 Single-Cell Auto Prep System, Fluidigm (1)
Agilent 2100 Bioanalyzer (1)
Unix (1)
GenePix 4000A [Axon Instruments] (1)
Illumina Genome Analyzer IIx (1)
G2565BA DNA microarray scanner [Agilent] (1)
Axon GenePix 4000B scanning hardware (1)
Illumina NovaSeq X (1)
NA (1)
Illumina HiSeq 1500 (1)
Illumina HiSeq 3000 (1)

Publication Date

2013 (62)
2008 (55)
2012 (54)
2011 (48)
2015 (46)
2014 (46)
2010 (42)
2016 (39)
2007 (39)
2025 (23)
2024 (23)
2009 (23)
2023 (22)
2022 (22)
2021 (22)
2018 (18)
2020 (14)
2019 (14)
2017 (14)
2026 (8)
2005 (8)
2006 (6)
2004 (1)

UNIPROT ID/AC

10090.ENSMUSP00000032399 (2)
10090.ENSMUSP00000097919 (2)
1433B_MOUSE (2)
1433E_MOUSE (2)
1433F_MOUSE (2)
1433G_MOUSE (2)
1433S_MOUSE (2)
1433T_MOUSE (2)
1433Z_MOUSE (2)
2A5A_MOUSE (2)
2A5E_MOUSE (2)
2A5G_MOUSE (2)
2AAA_MOUSE (2)
2AAB_MOUSE (2)
2ABA_MOUSE (2)
3BP1_MOUSE (2)
3HIDH_MOUSE (2)
4EBP1_MOUSE (2)
4F2_MOUSE (2)
5NT3B_MOUSE (2)
5NTC_MOUSE (2)
5NTD_MOUSE (2)
6PGD_MOUSE (2)
6PGL_MOUSE (2)
A0A0G2JDV3_MOUSE (2)
A0A0R4J159_MOUSE (2)
A0A140LIF8_MOUSE (2)
A0A1W2P6N8_MOUSE (2)
A0A286YCX6_MOUSE (2)
A0A2I3BQ48_MOUSE (2)

ENSEMBL ID

ENSG00000170477 (1)

CHEBI ID

CHEBI:75195 (1)
CHEBI:138553 (1)
CHEBI:138554 (1)
CHEBI:74240 (1)
CHEBI:72072 (1)
CHEBI:72076 (1)
CHEBI:91073 (1)
CHEBI:72065 (1)
CHEBI:72059 (1)
CHEBI:143617 (1)
CHEBI:143618 (1)
CHEBI:91065 (1)
CHEBI:72064 (1)
CHEBI:138909 (1)
CHEBI:74375 (1)
CHEBI:72058 (1)
CHEBI:72087 (1)
CHEBI:72086 (1)
CHEBI:72079 (1)
CHEBI:72073 (1)
CHEBI:72068 (1)
CHEBI:75194 (1)
CHEBI:91040 (1)
CHEBI:74372 (1)
CHEBI:72080 (1)
CHEBI:74238 (1)
CHEBI:91036 (1)
CHEBI:74371 (1)
CHEBI:74241 (1)
CHEBI:138914 (1)

Metabolite Name

L-Alanine (3)
L-Leucine (3)
Argininosuccinic-acid (2)
L-Aspartate (2)
L-Cystine (2)
L-citrulline (2)
Glycine (2)
Ornithine (2)
Choline (2)
Arginine (2)
Lysine (2)
Tyrosine (2)
Histamine (2)
Glutamine (2)
Creatinine (2)
L-Valine (2)
L-Isoleucine (2)
L-Methionine (2)
PI(39:6) (1)
PS(36:0) (1)
PI(35:1) (1)
PS(33:1) (1)
PE(34:1) (1)
Sodium 3-(trimethylsilyl)propionate (1)
PI(39:5) (1)
PE(36:1) (1)
2,3-DPG (1)
D-Ribulose-5-phosphate (1)
D-Glucose-1-phosphate (1)
Guanosine-diphosphate (1)

First Public Date

2025 (8)
2021 (8)
2022 (6)
2024 (4)
2020 (4)
2026 (3)
2023 (2)
2018 (2)
2017 (1)
2016 (1)

Study type

Transcription profiling by array (394)
RNA-seq of coding RNA (47)
Unknown experiment type (15)
ChIP-seq (9)
Methylation profiling by array (9)
RNA-seq of coding RNA from single cells (8)
Transcription profiling by RT-PCR (4)
Other (4)
RNA-seq of non coding RNA (4)
Comparative genomic hybridization by array (3)
RNA-seq of total RNA (2)
Human - High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
ATAC-seq (1)
MicroRNA profiling by array (1)
DNA-seq (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2013 (60)
2012 (55)
2008 (55)
2011 (48)
2014 (47)
2015 (46)
2010 (42)
2016 (39)
2007 (39)
2024 (35)
2025 (27)
2022 (23)
2009 (23)
2023 (22)
2019 (19)
2021 (15)
2020 (14)
2017 (12)
2018 (11)
2005 (8)
2026 (7)
2006 (6)
2004 (1)

Lab affiliation

Institute of Molecular Medicine and Experimental Immunology, BMZ-II, Building 12, University Hospital Bonn (2)
Center for Neuroscience and Cell Biology (1)
Chemical and Biological Integrative Research Center, Korea Institute of Science and Technology, Seoul, Republic of Korea (1)
Chemistry Institute, LADETEC, Proteomics Laboratory, UFRJ, RJ, Brazil. (1)
Department of Biochemistry and Molecular Genetics, School of Medicine, University of Colorado, Aurora, CO, USA (1)
Department of Biomedical Engineering, Tufts University (1)
Department of Biomedical Sciences, Panum Institute, University of Copenhagen, Blegdamsvej 3, 2200 Copenhagen N, Denmark. (1)
Department of Cellular and Molecular Medicine, University of Copenhagen (1)
Department of Clinical Sciences, Faculty of Veterinary Medicine, Utrecht University, Utrecht, the Netherlands (1)
Discovery Proteomics Facility (1)
Département d’Immunologie et Biologie Cellulaire, Faculté de Médecine et des Sciences de la Santé, Université de Sherbrooke, Sherbrooke, QC, Canada (1)
Département d’Immunologie et Biologie Cellulaire, Faculté de Médecine et des Sciences de la Santé, Université de Sherbrooke, Sherbrooke, Québec, Canada, (1)
Experimental Systems Immunology Laboratory, Max Planck Institute of Biochemistry, Martinsried, Germany Institute of Innate Immunity, Department of Systems Immunology and Proteomics, Medical Faculty, University of Bonn, Germany (1)
Experimental Systems Immunology Laboratory, Max Planck Institute of Biochemistry, Martinsried, Germany Institute of Innate Immunity, Department of Systems Immunology and Proteomics, Medical Faculty, University of Bonn, Germany (lab head) (1)
Head of the Curie Institute Mass Spectrometry platform (LSMP) (1)
Institute for Tumor Biology and Experimental Therapy Georg-Speyer-Haus 60596 Frankfurt/Main Germany (1)
Institute for Tumor Biology and Experimental Therapy Georg-Speyer-Haus 60596 Frankfurt/Main Germany (1)
Institute of Biomedical Sciences, Department of Anatomy, University of São Paulo, São Paulo, Brazil, Av. Prof. Lineu Prestes, 2415, Butantã, São Paulo, SP, 05508-000 (1)
Joslin Diabetes Center and Harvard Medical School One Joslin Place Boston, MA 02215 (1)
Laboratory of Lymphoid Organ Development Division of Experimental Oncology San raffaele Scientific Institute Via Olgettina, 60 20132 Milan (Italy) (1)
Laboratory of Stem Cell and Tissue Engineering, Orthopedic Research Institute, Department of Orthopedics, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu, Sichuan 610041, China. (1)
MD Anderson Cancer Center, Houston, TX (1)
Pôle de Recherche en Gynécologie, Institut de Recherche Expérimentale et Clinique, Université Catholique de Louvain, 1200 Brussels, Belgium (1)
School of Biomedical Sciences and Pharmacy, College of Health, Medicine and Wellbeing, University of Newcastle, Callaghan, and Precision Medicine Program, Hunter Medical Research Institute, NSW, 2308, Australia (1)
The Institute of Cancer Research Division of Molecular Pathology 237 Fulham Road, London, SW3 6JB (1)
UCLOuvain, Pôle de Recherche en Physiopathologie de la Reproduction, Avenue Hippocrate, 54 Bte. B1.55.03 - 1200 Bruxelles, Belgique (1)
University of Colorado Anschutz Medical Campus Obstetrics and Gynecology (1)
University of Edinburgh (1)
Université catholique de Louvain Institut de recherche expérimentale et clinique (IREC) GYNE Avenue Mounier 52/B1.52.02 1200 Woluwe-Saint-Lambert Belgium (1)
Urological Research Institute DiBit2, Scientific Institute San Raffaele Via Olgettina 60, 20132 Milan - Italy Tel: +39-02-2643.6351; Fax. +39-02-2643.5659 (1)

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Identification of NOTCH-driven matrisome-associated genes as prognostic indicators of multiple myeloma patient survival

PRJNA912649 | ENA

The Matrisome Is Associated with Metabolic Reprograming in Stem-like Phenotypes of Gastric Cancer.

Not available

S-EPMC8945874 | biostudies-literature

Systems level identification of a matrisome-associated macrophage polarisation state in multi-organ fibrosis.

Not available

S-EPMC10547479 | biostudies-literature

Education of tumour-associated macrophages by the tumour matrisome inhibits immune surveillance

PRJNA772736 | ENA

Identification of NOTCH-driven matrisome-associated genes as prognostic indicators of multiple myeloma patient survival

Multiple myeloma (MM) provides a permissive tumor microenvironment (TME), supporting tumor cell growth and dissemination, and conferring therapy resistance. RNAseq in the human MM cell lines RPMI 8226 and MM.1S after knockdown of NOTCH1 (N1) and NOTCH2 (N2) was performed to identify genes and pathwa...

ORGANISM(S): Homo sapiens

2025-12-16 | GSE221038 | GEO

Transcriptional activation of genes associated with the matrisome is a common feature of senescent endothelial cells.

Not available

S-EPMC11825616 | biostudies-literature

Identification of Key Gene Related to Matrisome in HBV-Associated Liver Cirrhosis via Bioinformatics Analysis.

Not available

S-EPMC12401599 | biostudies-literature

Matrisome-focused integrative omics analysis reveals stromal phenotypes associated with consensus molecular subtypes in colorectal cancer

Matrisome-focused integrative omics analysis reveals stromal phenotypes associated with consensus molecular subtypes in colorectal cancer This reseaerch is conducted using colorectal cancer. TMT 11plex experiment

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2022-10-27 | MSV000090604 | MassIVE

Multi-platform proteomic analysis of Alzheimer's disease cerebrospinal fluid and plasma reveals network biomarkers associated with proteostasis and the matrisome.

Not available

S-EPMC9670630 | biostudies-literature

Spatial Distribution of Tumor Cells in Clear Cell Renal Cell Carcinoma Is Associated with Metastasis and a Matrisome Gene Expression Signature.

Not available

S-EPMC11763402 | biostudies-literature

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845 Results

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Organisms

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CHEBI ID

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