Sort   by:  
 Page size 
ProteomicsMaxQuant software for ion mobility enhanced shotgun proteomics
Ion mobility can add a dimension to LC-MS based shotgun proteomics which has the potential to boost proteome coverage, quantification accuracy and dynamic range. Required for this is suitable software that extracts the information contained in the four-dimensional (4D) data space spanned by m/z, re...
ORGANISM(S): Homo sapiens (Human) Escherichia coli Saccharomyces cerevisiae (Baker's yeast) 
2020-04-23 | PXD014777 | Pride
Tims Human Yeast Maxquant Hela Ecoli 
ProteomicsMaxQuant DIA Complete submission
Reanalysis of submission PXD005573 using MaxQuant-DIA and MaxQuant. First complete submission in mzTab for Data independent adquisition.
ORGANISM(S): Homo sapiens (Human) 
2020-08-07 | PXD020776 | Pride
Maxquant Data independent adquisition 
UnknownWorkflow for analysis of high mass accuracy salivary data set using MaxQuant and ProteinPilot search algorithm.
Not available
S-EPMC3618284 | biostudies-literature
UnknownFacilitating analysis and dissemination of proteomics data through metadata integration in MaxQuant.
Not available
S-EPMC12462489 | biostudies-literature
UnknownThe Lottia gigantea shell matrix proteome: re-analysis including MaxQuant iBAQ quantitation and phosphoproteome analysis.
Not available
S-EPMC4094399 | biostudies-literature
UnknownIsobaric Matching between Runs and Novel PSM-Level Normalization in MaxQuant Strongly Improve Reporter Ion-Based Quantification.
Not available
S-EPMC7586393 | biostudies-literature
ProteomicsMaxQuant Label Free Quantification wrapped as a Software Service
Scientific services in the area of OMICS research is becoming increasingly popular. In gen- eral omics research can produce a massive amount of data that can pose a challenge for computing infrastructure. While in the genomics area, many applications can run on Linux nodes the situation in proteomic...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2022-09-23 | PXD008535 | Pride
Reproducible research Quality control Software as a service Label free quantification Proteomics Maxquant Automation Data dependent aquisition Scientific workflows and services 
ProteomicsComparative Evaluation of MaxQuant and Proteome Discoverer MS1-based Protein Quantification Tools
MS1-based label-free quantification can compare precursor ion peaks across runs, allowing reproducible protein measurements. Among bioinformatic platforms enabling MS1-based quantification, MaxQuant (MQ) is one of the most used, while Proteome Discoverer (PD) has recently introduced the Minora tool....
ORGANISM(S): Homo sapiens (Human) Saccharomyces cerevisiae (Baker's yeast) 
2021-05-31 | PXD022169 | Pride
Dynamic range Proteomics Mass spectrometry Specificity Sensitivity Accuracy Precision Label-free quantification Differential analysis 
ProteomicsIsobaric matching between runs and novel PSM-level normalization in MaxQuant strongly improve reporter ion-based quantification - mouse tissue dataset
Isobaric labeling has the promise of combining high sample multiplexing with precise quantification. However, normalization issues and the missing value problem of complete n-plexes hamper quantification across more than one n-plex. Here we applied two novel algorithms implemented in MaxQuant that s...
ORGANISM(S): Mus musculus (Mouse) 
2020-06-22 | PXD019880 | Pride
Match between runs Normalization Tandem mass tag Isobaric labeling Multiplexed quantification 
ProteomicsIsobaric matching between runs and novel PSM-level normalization in MaxQuant strongly improve reporter ion-based quantification - Peli1 knock-out mice dataset
Isobaric labeling has the promise of combining high sample multiplexing with precise quantification. However, normalization issues and the missing value problem of complete n-plexes hamper quantification across more than one n-plex. Here we introduce two novel algorithms implemented in MaxQuant that...
ORGANISM(S): Mus musculus (Mouse) 
2020-06-22 | PXD019881 | Pride
Match between runs Normalization Tandem mass tag Isobaric labeling Multiplexed quantification 
Sort   by:  
 Page size