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ProteomicsMaxQuant software for ion mobility enhanced shotgun proteomics
Ion mobility can add a dimension to LC-MS based shotgun proteomics which has the potential to boost proteome coverage, quantification accuracy and dynamic range. Required for this is suitable software that extracts the information contained in the four-dimensional (4D) data space spanned by m/z, re...
ORGANISM(S): Homo sapiens (Human) Escherichia coli Saccharomyces cerevisiae (Baker's yeast) 
2020-04-23 | PXD014777 | Pride
Tims Human Yeast Maxquant Hela Ecoli 
ProteomicsNovel interconnections of HOG signaling revealed by combined use of two proteomic software packages
Modern quantitative mass spectrometry (MS)-based proteomics enables researchers to unravel signaling networks by monitoring proteome-wide cellular responses to different stimuli. MS-based analysis of signaling systems usually requires an integration of multiple quantitative MS experiments, which rem...
ORGANISM(S): Saccharomyces Cerevisiae 
PXD013789 | panorama
UnknownMaxQuant Software for Ion Mobility Enhanced Shotgun Proteomics.
Not available
S-EPMC7261821 | biostudies-literature
ProteomicsPeptideVisualizer: a novel software solution for PROTOMAP analysis
PeptideVisualizer is an open-source software for PROTOMAP analysis, offering an intuitive graphical user interface and command-line compatibility. The software processes mass spectrometry data output from MaxQuant to visualize protein migration in polyacrylamide gel electrophoresis and sequence cove...
ORGANISM(S): Homo sapiens (Human) 
2026-06-08 | PXD071266 | Pride
Open-source software Mass spectrometry Maxquant Proteolysis Protomap Peptidevisualizer 
ProteomicsMaxQuant Label Free Quantification wrapped as a Software Service
Scientific services in the area of OMICS research is becoming increasingly popular. In gen- eral omics research can produce a massive amount of data that can pose a challenge for computing infrastructure. While in the genomics area, many applications can run on Linux nodes the situation in proteomic...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2022-09-23 | PXD008535 | Pride
Reproducible research Quality control Software as a service Label free quantification Proteomics Maxquant Automation Data dependent aquisition Scientific workflows and services 
GenomicsBenchmarking Software for DDA-PASEF Immunopeptidomics
Benchmarking Software for DDA-PASEF Immunopeptidomics
PRJEB98909 | ENA
ProteomicsBenchmarking Software for DDA-PASEF Immunopeptidomics
Mass spectrometry (MS) is the method of choice for high-throughput identification of immunopeptides, which are generated by intracellular proteases, unlike proteomics peptides that are typically derived from trypsin-digested proteins. This distinction necessitates searching without the constraints o...
ORGANISM(S): Homo Sapiens (human) 
2026-06-26 | PXD065501 | JPOST Repository
ProteomicsMaxQuant Complete Submission: First Complete Submission in mzTab MaxQuant
This is the first MaxQuant Complete submission in mzTab and should be take as a reference for other softwares to export mzTab Complete Submissions into PRIDE Archive.
ORGANISM(S): Candida albicans (Yeast) 
2018-09-28 | PXD011194 | Pride
Maxquant Complete submission Mztab 
UnknownMaxReport: An Enhanced Proteomic Result Reporting Tool for MaxQuant.
Not available
S-EPMC4803341 | biostudies-literature
UnknownQuantitative Cross-linking/Mass Spectrometry Using Isotope-labeled Cross-linkers and MaxQuant.
Not available
S-EPMC4974350 | biostudies-literature
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