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ProteomicsPeptideVisualizer: a novel software solution for PROTOMAP analysis
PeptideVisualizer is an open-source software for PROTOMAP analysis, offering an intuitive graphical user interface and command-line compatibility. The software processes mass spectrometry data output from MaxQuant to visualize protein migration in polyacrylamide gel electrophoresis and sequence cove...
ORGANISM(S): Homo sapiens (Human) 
2026-06-08 | PXD071266 | Pride
Open-source software Mass spectrometry Maxquant Proteolysis Protomap Peptidevisualizer 
TranscriptomicsThe protomap is propagated to cortical plate neurons through an Eomes-dependent intermediate map
The cortical area map is initially patterned by transcription factor (TF) gradients in the neocortical primordium, which define a protomap in the embryonic ventricular zone (VZ). However, mechanisms that propagate regional identity from VZ progenitors to cortical plate (CP) neurons are unknown. Here...
ORGANISM(S): Mus musculus 
2013-04-02 | E-GEOD-43387 | biostudies-arrayexpress
ProteomicsPROTOMAP analysis of Human Cartoid Plaques
Human cartoid plaques were removed in operating room and placed in tube with PBS.Plaques were then analyzed for presence of rupture. The ulcerated lesicon was then excised and subjected to protein extraction. Areas of stable plaque tissue was then excised as a control.
ORGANISM(S): Homo sapiens (Human) 
2020-08-10 | PXD020405 | Pride
Human Plaques Protomap 
UnknownProtoMAP: prototypical network based few-shot learning for missed abortion prediction.
Not available
S-EPMC12465688 | biostudies-literature
ProteomicsBrain death associated activation of Calpain-Talin axis in donor kidneys underlies podocyte matrix degradation and graft dysfunction in kidney transplantation
Deceased kidney donation after brain death (DBD) is the main source of transplants, yet these grafts yield inferior transplant outcomes when compared to living donation. In brain death, cerebral injury contributes to systemic biological dysregulation, causing significant cellular stress in donor kid...
ORGANISM(S): Homo sapiens (Human) 
2022-08-12 | PXD022074 | Pride
Kidney cytoskeleton Podocytes Donation after brain death (dbd) Protein degradation Allograft dysfunction Kidney transplantation 
UnknownThe protomap is propagated to cortical plate neurons through an Eomes-dependent intermediate map.
Not available
S-EPMC3593833 | biostudies-literature
TranscriptomicsThe protomap is propagated to cortical plate neurons through an Eomes-dependent intermediate map
The cortical area map is initially patterned by transcription factor (TF) gradients in the neocortical primordium, which define a protomap in the embryonic ventricular zone (VZ). However, mechanisms that propagate regional identity from VZ progenitors to cortical plate (CP) neurons are unknown. Here...
ORGANISM(S): Mus musculus 
2013-04-02 | GSE43387 | GEO
ProteomicsWild-type and O/E uPA in mouse aortic arches_PROTOMAP
Aortic arches from WT and overexpression of uPA were extracted and their proteome was processed and subjected to PROTOMAP analysis.
ORGANISM(S): Mus musculus (Mouse) 
2020-08-10 | PXD020406 | Pride
Protomap Aortic arches Upa 
UnknownRadial glia fibers translate Fgf8 morphogenetic signals to generate a thalamic nuclear complex protomap in the mantle layer.
Not available
S-EPMC6420463 | biostudies-literature
GenomicsMus musculus
The protomap is propagated to cortical plate neurons through an Eomes-dependent intermediate map
PRJNA186333 | ENA
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