McHugh D D - OmicsDI

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Unknown (522)
Transcriptomics (16)
Proteomics (7)
Genomics (3)
Metabolomics (1)

Organisms

Homo sapiens (14)
Mus musculus (4)
Plasmodium falciparum 3D7 (3)
Haloferax volcanii (1)
Mycobacterium tuberculosis (1)
Bos taurus (1)
Rattus norvegicus (1)

Organisms

Haloferax volcanii (1)

Repository

biostudies-arrayexpress (18)
pride (7)
MetaboLights (1)
ENA (1)

Tissue

Blood (3)
Acute myeloid leukemia cell (1)
Blood cell (1)
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Cell culture (1)
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Pancreatic adenocarcinoma cell line (1)

Disease

Lymphoma (1)
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Plasmodium falciparum malaria (1)

Technology Type

Mass Spectrometry (7)
Affinity purification coupled with mass spectrometry proteomics (5)
Shotgun proteomics (2)
Mass spectrometry (1)
Data-dependent acquisition (1)
MSE (1)

Instrument Platform

Bioanalyser (1)
Variable Atmosphere Incubator (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 3000 (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2012 (5)
2015 (3)
2020 (2)
2016 (2)
2021 (2)
2019 (2)
2018 (1)
2014 (1)
2013 (1)
2010 (1)
2009 (1)
2008 (1)
2007 (1)
2026 (1)
2025 (1)
2017 (1)

CHEBI ID

CHEBI:1148 (1)
CHEBI:15354 (1)
CHEBI:15414 (1)
CHEBI:15422 (1)
CHEBI:15584 (1)
CHEBI:15713 (1)
CHEBI:15721 (1)
CHEBI:15728 (1)
CHEBI:15741 (1)
CHEBI:15781 (1)
CHEBI:15846 (1)
CHEBI:15891 (1)
CHEBI:15996 (1)
CHEBI:16020 (1)
CHEBI:16027 (1)
CHEBI:16070 (1)
CHEBI:16084 (1)
CHEBI:16264 (1)
CHEBI:16335 (1)
CHEBI:16436 (1)
CHEBI:16675 (1)
CHEBI:16680 (1)
CHEBI:16695 (1)
CHEBI:16704 (1)
CHEBI:16708 (1)
CHEBI:16732 (1)
CHEBI:16737 (1)
CHEBI:16755 (1)
CHEBI:16761 (1)
CHEBI:16811 (1)

Metabolite Name

1,5-Anhydroglucitol (1)
2-Hydroxybutyrate (1)
2-Oxoglutarate (1)
3-Hydroxybutyrate (1)
6-Phosphogluconate (1)
Aspartate (1)
CTP (1)
Chenodeoxycholate (1)
Citramalate (1)
Citrate (1)
Citrulline (1)
Creatine (1)
Diphosphoglycerate (1)
Fructose-1,6-diphosphate (1)
Fructose-6-phosphate (1)
GDP (1)
GDP-glucose (1)
GTP (1)
Gluconate (1)
Glucose-6-phosphate (1)
Glutamate (1)
Glyceraldehyde-3-phosphate (1)
Glycerate (1)
Glycerol-phosphate (1)
Glycerophosphoethanolamine (1)
Glycochenodeoxycholate (1)
Histidine (1)
Indoxyl-sulfate (1)
Isoleucine (1)
Keto(iso)leucine (1)

First Public Date

2014 (1)

Study type

Transcription profiling by array (12)
RNA-seq of coding RNA (3)
ChIP-seq (2)
Transcription profiling by tiling array (1)

Release Date

2021 (69)
2023 (63)
2022 (63)
2024 (57)
2025 (54)
2020 (35)
2016 (27)
2019 (26)
2018 (25)
2017 (21)
2015 (19)
2012 (18)
2014 (16)
2013 (12)
2011 (9)
2010 (6)
2009 (5)
2008 (4)
2007 (3)
2026 (3)
2006 (2)
1999 (2)
1997 (1)

Lab affiliation

University of Melbourne (2)
Associate Professor, Division of Hematology, Department of Internal Medicine, The Ohio State University Wexner Medical Center (1)
Clinical and Diagnostic Immunology, Department Microbiology, Immunology and Transplantation, KU Leuven, Leuven, Belgium Laboratory Medicine, University Hospitals Leuven, Leuven, Belgium (1)
Department of Biochemistry and Pharmacology, The University of Melbourne, Parkville, Australia (1)
GlaxoSmithKline (GSK) (1)
University of California San Diego (1)

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A fluorogenic, peptide-based probe for the detection of Cathepsin D in macrophages.

Not available

S-EPMC10622513 | biostudies-literature

Data showing non-conventional HLA-B27 expression in axial joints and gut tissue from B27 transgenic rats, and in frozen and paraffin-fixed synovial SpA tissue.

Not available

S-EPMC5018064 | biostudies-literature

Association Between Vitamin D Insufficiency and Impaired Bone Density Among Adolescents With Perinatally Acquired HIV Infection.

Not available

S-EPMC11411771 | biostudies-literature

RNA antisense purification with mass spectrometry (RAP-MS) experiment for identification of GRAS1 non-coding RNA interacting proteins

GRAS1 non-coding RNA is required for cell survival in A549 lung cancer cells. We identified the protein interactome of GRAS1 RNA using RAP-MS, then compared the results of the GRAS1 capture to captures of positive control U1 RNA and negative control luciferase RNA. Unique proteins binding specifical...

ORGANISM(S): Homo sapiens (Human)

2026-09-28 | PXD042699 | Pride

Whole blood metabolomics of dementia patients reveal classes of disease-linked metabolites

Dementia is caused by factors that damage neurons. We quantified small molecular markers in whole blood of dementia patients, using non-targeted liquid chromatography-mass spectroscopy (LC-MS). Thirty-three metabolites, classified into 5 groups (A-E), differed significantly in dementia patients, ...

2021-07-06 | MTBLS2109 | MetaboLights

Mode-of-action analysis of the effects induced by nicotine in the in vitro micronucleus assay.

Not available

S-EPMC6900147 | biostudies-literature

Achieving Kaiser Permanente quality.

Not available

S-EPMC4892964 | biostudies-literature

Closure of Anchor Businesses Reduced COVID-19 Transmission During the Early Months of the Pandemic.

Not available

S-EPMC8630922 | biostudies-literature

Rural And Nonrural Primary Care Physician Practices Increasingly Rely On Nurse Practitioners.

Not available