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MetabolomicsThe rumen metagenome and its metabolome in yaks associated with feeding regime

Background: Grazing yearly on pasture is a traditional practice for yaks, which cannot meet the requirements of yak products since the insufficient forage supplied in the cold season results in a long production cycle. An intensive feeding system increasing production efficiency has been selected...

2024-10-01 | MTBLS10856 | MetaboLights
MetabolomicsIntegrating metagenome-scale metabolic models and metabolomics to explore candidate biochemical interactions in cultivated Microcystis phycospheres

Favoured by global changes, freshwater cyanobacterial harmful blooms generate major ecological, economical and public health challenges. Microcystis, one of the most widespread cyanobacterial genera, grows within a phycosphere where specialised interactions with its microbiome occur, and...

2026-08-14 | MTBLS13909 | MetaboLights
MetabolomicsMetagenomic and metabolomic analyses reveal the role of gut microbiome-associated metabolites in the muscle elasticity of large yellow croaker (Larimichthys crocea)

The large yellow croaker (LYC, Larimichthys crocea) is highly regarded for its delicious taste and unique flavor. The gut microbiota has the ability to affect the host muscle performance and elasticity by regulating nutrient metabolism. However, the mechanism by which the intestinal micr...

2025-07-31 | MTBLS10457 | MetaboLights
MetabolomicsIntegrated Physiological and Multi-Omics Analyses Reveal Nitrogen Fertilization Promotes Salix matsudana Growth and Soil Remediation

Soil contamination with heavy metals, particularly lead (Pb) and cadmium (Cd), has become a growing environmental concern due to rapid industrialization. Salix matsudana, a woody energy plant with notable tolerance to heavy metals, exhibits considerable potential for use in phytoremediation...

2025-07-19 | MTBLS12749 | MetaboLights
MetabolomicsMulti-omics analyses of serum metabolome and gut microbiome reveal shifted metabolites associated with gut microbial dysbiosis in Guillain-Barre syndrome

Objective: Guillain barre syndrome (GBS) is a rare immune-mediated inflammatory disease of the complex peripheral nervous system. Long-term “silent infection” caused by changes in intestinal flora is potentially a contributing factor for immune-mediated inflammatory diseases, but the causative li...

2025-02-20 | MTBLS10392 | MetaboLights
ProteomicsMicrobiome adaptations and the role of abundant metagenomically assembled genomes (MAGs) from a production-scale biogas plant consisting of three independent digesters as revealed by MAG-centric metagenomics and metaproteomics
Current developments have led to a reconsidering of energy policy in many countries with the aim of increasing the share of renewable energies in the energy supply, where the anaerobic digestion (AD) of biomass to produce methane also plays an important role. To improve biomass digestion while ensur...
ORGANISM(S): anaerobic digester metagenome 
2024-01-26 | PXD044571 | Pride
Anaerobic digestion Metagenome analyses Biogas microbiome Metagenomic binning Metaproteome analyses Biogas process chain 
ProteomicsLC-MS/MS of autotrophic culture BP, that performs nitrate reduction coupled to iron(II) oxidation (NDFO)
Nitrate-reducing iron(II)-oxidizing (NDFO) bacteria are widespread in the environment contribute to nitrate removal and influence the fate of the greenhouse gases nitrous oxide and carbon dioxide. The autotrophic growth of nitrate-reducing iron(II)-oxidizing bacteria is rarely investigated and poorl...
ORGANISM(S): freshwater sediment metagenome 
2021-05-17 | PXD023710 | Pride
Metagenome Nitrate reduction Iron oxidation Lc-ms/ms 
UnknownMetagenome and Metatranscriptome Analyses Using Protein Family Profiles.
Not available
S-EPMC4939949 | biostudies-literature
ProteomicsSimultaneous metagenome-informed metaproteomics of the human gut microbiome, host and dietary exposome uncover functional interactomes in health & IBD
Host-microbiome-dietary interactions play crucial roles in regulating human health, yet direct functional assessment of their interplays, cross-regulations and downstream disease impacts remains challenging. We adopted metagenome-informed metaproteomics (MIM), in both mice and humans, to simultaneou...
ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human) gut metagenome 
2025-08-08 | PXD057701 | Pride
Microbiome Diet Metagenomics-informed metaproteomics Proteomics Host Biomarker 
ProteomicsIntegrated metagenomic and metaproteomic analyses of marine biofilm communities
Metagenomic and metaproteomic analyses were utilized to determine the composition and function of complex air-water interface biofilms sampled from the hulls of two ships that were deployed in different geographic locations.
ORGANISM(S): biofilm metagenome 
2014-10-13 | PXD000961 | Pride
Biofouling  diatoms  metagenome  metaproteome  quantitative proteomics  ship hul 
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