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ProteomicsAn Integrated Systems Approach Unveils New Aspects of Microoxia-mediated Regulation in Bradyrhizobium diazoefficiens
Using an integrated systems approach, the expressed proteome of B. diazoefficiens strain 110scp4 was measured under i) normal, oxic growth, and ii) microoxic growth condtions. This included, as a first step, the sequencing and de novo assembly of the genome of this widely used rhizobial model strain...
ORGANISM(S): Bradyrhizobium diazoefficiens 
2019-05-30 | PXD012491 | Pride
Comparative genomics Microoxia Proteogenomics Shotgun proteomics Symbiosis B. diazoefficiens Genome sequencing Transcriptomics Rhizobia Fnr/crp proteins 
UnknownAn Integrated Systems Approach Unveils New Aspects of Microoxia-Mediated Regulation in Bradyrhizobium diazoefficiens.
Not available
S-EPMC6515984 | biostudies-literature
ProteomicsPleiotropic effects of PhaR regulator in Bradyrhizobium diazoefficiens microaerobic metabolism
Bradyrhizobium diazoefficiens can live inside soybean root nodules and in free-living conditions. In both states, when oxygen levels decrease, cells adjust their protein pools by gene transcription modulation. PhaR encodes a transcription factor annotated as PHA (polyhydroxyalkanoate) accumulation r...
ORGANISM(S): Bradyrhizobium japonicum USDA 110 Bacteria 
2024-05-22 | PXD047760 | Pride
Polyhydroxybutyrate Proteomics Microoxia Protein-dna interaction Rhizobia Transcriptomics 
TranscriptomicsPleiotropic effects of PhaR regulator in Bradyrhizobium diazoefficiens microaerobic metabolism
Genome-wide transcription profiling of B. diazoefficiens (formerly B. japonicum) and a phaR mutant, both cultured under microoxic conditions (0.5% O2) in Götz minimal medium supplemented with mannitol. Keywords: microoxia, polyhydroxybutyrate, protein-DNA interaction, proteomics, Rhizobia, transcrip...
ORGANISM(S): Bradyrhizobium diazoefficiens Bradyrhizobium diazoefficiens USDA 110 
2024-02-28 | GSE250298 | GEO
TranscriptomicsFine-tuning modulation of oxidation-mediated posttranslational control of Bradyrhizobium diazoefficiens FixK2 transcription factor
Genome-wide transcription profiling of B. diazoefficiens (formerly B. japonicum) wild type and a C183D FixK2 encoding strain which were cultured under microoxic conditions (0.5% O2). For comparison, this work also includes the expression data samples GSM210246 to GSM210268, and samples GSM313727 to ...
ORGANISM(S): Bradyrhizobium diazoefficiens Bradyrhizobium diazoefficiens USDA 110 
2022-05-05 | GSE196031 | GEO
TranscriptomicsExpanding the regulon of the Bradyrhizobium diazoefficiens NnrR transcription factor: New insights into denitrification pathway
Genome-wide transcription profiling of B. diazoefficiens (formerly B. japonicum) wild type and nnrR mutant strain which were grown in free-living anoxic denitrifying conditions (using nitrate as final electron aceptor). This study includes also the expression data of the wild type strain grown oxica...
ORGANISM(S): Bradyrhizobium diazoefficiens Bradyrhizobium diazoefficiens USDA 110 
2019-08-22 | GSE130684 | GEO
UnknownPseudomonas aeruginosa lasR mutant fitness in microoxia is supported by an Anr-regulated oxygen-binding hemerythrin.
Not available
S-EPMC7022198 | biostudies-literature
UnknownPleiotropic Effects of PhaR Regulator in Bradyrhizobium diazoefficiens Microaerobic Metabolism.
Not available
S-EPMC10888616 | biostudies-literature
GenomicsPleiotropic effects of PhaR regulator in Bradyrhizobium diazoefficiens microaerobic metabolism
Pleiotropic effects of PhaR regulator in Bradyrhizobium diazoefficiens microaerobic metabolism
PRJNA1053330 | ENA
UnknownConserved <i>C</i>-Terminal Tail Is Responsible for Membrane Localization and Function of <i>Pseudomonas aeruginosa</i> Hemerythrin.
Not available
S-EPMC11481101 | biostudies-literature
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