Mill J J - OmicsDI

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Unknown (1089)
Proteomics (163)
Transcriptomics (109)
Metabolomics (92)
Genomics (12)

Organisms

Homo sapiens (56)
Mus musculus (46)
Saccharomyces cerevisiae (33)
Arabidopsis thaliana (16)
Solanum lycopersicum (15)
Rattus norvegicus (10)
Triticum aestivum (7)
Candida albicans (4)
Gallus gallus (3)
Solanum tuberosum subsp. andigenum (2)
Bacillus subtilis (2)
Candidatus Liberibacter solanacearum (1)
Pseudotsuga menziesii (1)
Saccharomyces cerevisiae x Saccharomyces paradoxus (1)
Solanum pimpinellifolium (1)
Rickettsia conorii (1)
Capra hircus (1)
Pimephales promelas (1)
Cyclamen persicum (1)
Cucumis sativus (1)
Seminavis robusta (1)
Plasmodium chabaudi chabaudi (1)
Macaca mulatta (1)
Verticillium dahliae (1)
Tetranychus urticae (1)
Propionibacterium freudenreichii subsp. shermanii (1)
Daphnia magna (1)
Medicago truncatula (1)
Vitis vinifera (1)
Staphylococcus aureus (1)

Repository

pride (153)
biostudies-arrayexpress (114)
MetaboLights (92)
EGA (6)
MassIVE (5)
iProX (2)
ENA (2)
jPOST (1)
PAXDB (1)

Tissue

Cell culture (16)
Epithelial cell (8)
Liver (8)
Plant cell (8)
Heart (6)
Leaf (6)
Lung (4)
Permanent cell line cell (4)
Brain (3)
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Hepatocyte (3)
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Whole body (3)
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Seed (2)
Skin (2)
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Blood serum (1)
Blood vessel (1)
Brown adipose tissue (1)
CCD-18Co cell (1)
Cardiac muscle of left ventricle (1)
HeLa cell (1)
JURKAT cell (1)

Disease

Disease free (3)
Acute leukemia (2)
Breast cancer (2)
Cardiovascular system disease (2)
Heart failure (2)
Trypanosomiasis (2)
Type 1 diabetes mellitus (2)
Inoculated with P. syringae pv. tomato strain DC3000 + avrRps4 (1)
Sham infected (1)
IBDV infected (1)
Cervix carcinoma (1)
Colon cancer (1)
Emphysema (1)
Fibrosarcoma (1)
Gastric adenocarcinoma (1)
Hepatocellular carcinoma (1)
Inflammatory bowel disease (1)
Lung cancer (1)
Lung combined type small cell carcinoma (1)
Malignant neoplasm of ovary (1)
Pre-eclampsia (1)
Prostate cancer (1)
Psoriasis (1)
Sciatic nerve (1)
Severe COVID-19 (1)
Skeletal muscle atrophy (1)
Visceral leishmaniasis (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (153)
Shotgun proteomics (89)
Mass spectrometry (80)
Bottom-up proteomics (23)
Affinity purification coupled with mass spectrometry proteomics (21)
Data-dependent acquisition (13)
Top-down proteomics (7)
Data-independent acquisition (6)
Mass spectrometry assay (5)
NMR spectroscopy assay (5)
SWATH MS (5)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Gel-based experiment (4)
NMR spectroscopy (3)
All-ion fragmentation (2)
HDMSE (2)
SRM/MRM (2)
Affinity proteomics (1)
Immunopeptidomics (1)
Metaproteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (15)
Liquid Chromatography MS - negative - reverse phase (12)
Exactive (Thermo Scientific) (9)
Gas Chromatography MS - positive (9)
Gas Chromatography MS - (8)
Illumina HiSeq 2000 (7)
NextSeq 500 (4)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (4)
Liquid Chromatography MS - negative - hilic (4)
Nuclear Magnetic Resonance (NMR) - - - Bruker (4)
AB SOLiD 4 System (3)
6540 Q-TOF LC/MS (Agilent) (3)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (3)
Liquid Chromatography MS - alternating - reverse phase (3)
Liquid Chromatography MS - positive - hilic (3)
Nuclear Magnetic Resonance (NMR) - (3)
Illumina HiSeq 2500 (2)
Illumina NovaSeq 6000 (2)
Q Exactive (2)
TripleTOF 6600 (2)
6530 Q-TOF LC/MS (Agilent) (2)
Diode array detection MS - positive - reverse phase (2)
Leco Pegasus III (2)
Liquid Chromatography MS - (2)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (2)
Liquid Chromatography MS - negative - reverse-phase (2)
Liquid Chromatography MS - positive - reverse-phase (2)
MaXis (Bruker) (2)
Illumina HiSeq 4000 (1)
LTQ Orbitrap XL (1)

Publication Date

2021 (36)
2020 (27)
2023 (26)
2022 (26)
2025 (26)
2013 (24)
2014 (22)
2026 (21)
2018 (21)
2019 (21)
2015 (20)
2016 (17)
2024 (16)
2012 (16)
2017 (12)
2010 (9)
2008 (8)
2005 (7)
2009 (6)
2011 (4)
2007 (3)

UNIPROT ID/AC

14331_SOLLC (1)
14335_SOLLC (1)
14337_SOLLC (1)
14338_SOLLC (1)
4081.Solyc01g005100.2.1 (1)
4081.Solyc01g005290.2.1 (1)
4081.Solyc01g005320.2.1 (1)
4081.Solyc01g005340.2.1 (1)
4081.Solyc01g006330.2.1 (1)
4081.Solyc01g006360.2.1 (1)
4081.Solyc01g006470.1.1 (1)
4081.Solyc01g006670.2.1 (1)
4081.Solyc01g006680.2.1 (1)
4081.Solyc01g006980.2.1 (1)
4081.Solyc01g007170.2.1 (1)
4081.Solyc01g008130.2.1 (1)
4081.Solyc01g008250.2.1 (1)
4081.Solyc01g008330.2.1 (1)
4081.Solyc01g008750.1.1 (1)
4081.Solyc01g008810.2.1 (1)
4081.Solyc01g008860.1.1 (1)
4081.Solyc01g008970.2.1 (1)
4081.Solyc01g009120.2.1 (1)
4081.Solyc01g009720.1.1 (1)
4081.Solyc01g009840.1.1 (1)
4081.Solyc01g010920.1.1 (1)
4081.Solyc01g014110.2.1 (1)
4081.Solyc01g014330.2.1 (1)
4081.Solyc01g014460.1.1 (1)
4081.Solyc01g016510.1.1 (1)

CHEBI ID

CHEBI:17992 (31)
CHEBI:30769 (31)
CHEBI:15428 (28)
CHEBI:15741 (28)
CHEBI:17268 (25)
CHEBI:18012 (25)
CHEBI:28044 (24)
CHEBI:16865 (23)
CHEBI:6650 (23)
CHEBI:16335 (22)
CHEBI:15756 (21)
CHEBI:17234 (20)
CHEBI:17822 (20)
CHEBI:28757 (20)
CHEBI:30915 (20)
CHEBI:16958 (19)
CHEBI:17306 (19)
CHEBI:26078 (19)
CHEBI:28300 (19)
CHEBI:28842 (19)
CHEBI:30746 (19)
CHEBI:16196 (18)
CHEBI:16811 (18)
CHEBI:26271 (18)
CHEBI:27266 (18)
CHEBI:27897 (18)
CHEBI:16449 (17)
CHEBI:16704 (17)
CHEBI:17351 (17)
CHEBI:17497 (17)

Metabolite Name

Sucrose (16)
Malic acid (13)
Citric acid (12)
Adenosine (11)
Fructose (11)
Glucose (11)
Sucrose (11)
Asparagine (10)
Galactinol (10)
Glycine (10)
Isoleucine (10)
Myo-inositol (10)
Azelaic acid (9)
Choline (9)
L-Glutamine (9)
Phenylalanine (9)
Serine (9)
Succinic acid (9)
Tryptophan (9)
Uridine (9)
Valine (9)
Alanine (8)
Betaine (8)
Fumaric acid (8)
Gluconic acid (8)
Glutamine (8)
Inosine (8)
L-Leucine (8)
Leucine (8)
Phosphoric acid (8)

First Public Date

2025 (1)
2023 (1)

Modification

+3amu) (1)
15.99491 (1)
57.02146 (1)

Study type

Transcription profiling by array (65)
RNA-seq of coding RNA (31)
Other (4)
ChIP-seq (3)
RIP-seq (2)
Methylation profiling by array (2)
RNA-seq of non coding RNA (2)
ChIP-chip by tiling array (1)
Human - High-throughput sequencing (1)
CLIP-seq (1)
Proteomic profiling by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (109)
2021 (99)
2016 (95)
2025 (93)
2024 (91)
2020 (89)
2023 (74)
2015 (65)
2014 (63)
2019 (59)
2017 (55)
2018 (44)
2013 (44)
2012 (44)
2011 (33)
2010 (29)
2009 (23)
2008 (18)
2005 (16)
2026 (14)
2007 (13)
2004 (10)
2006 (9)
2001 (5)
2003 (2)
2002 (2)
1999 (2)
2000 (1)
1998 (1)
1996 (1)

Lab affiliation

Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Strasbourg, France (7)
University of Edinburgh (4)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (3)
Department of Leukemia, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX (3)
Departamento de Medicina Animal, Hospital Clínico Veterinario Universidad de Extremadura Avd de la Universidad s/n 10003 Cáceres SPAIN (2)
Department of Functional Genomics, Interfaculty Institute for Genetics and Functional Genomics, University Medicine Greifswald, Greifswald, Germany (2)
Gregor Mendel Institute of Molecular Plant Biology GmbH Dr. Bohr-Gasse 3, 1030 Vienna, Austria Phone: +43 1 79044 9850 http://www.gmi.oeaw.ac.at (2)
Jiangsu Academy of Agricultural Sciences (2)
Leukemia Department, MD Anderson Cancer Center, Houston, TX 77030 (2)
Oncology/pathology (2)
1 Department of Biological Sciences, College of Arts and Sciences, University of North Texas, Denton, TX 2 Advanced Environmental Research Institute (AERI), University of North Texas, Denton, TX (1)
1: Physiology of reproduction, Veterinary Faculty, Campus of Excellence Mare Nostrum, University of Murcia. 2: IMIB-Arrixaca, Murcia, Spain. (1)
AG Fischer BZH University Heidelberg INF 328 69120 Heidelberg Germany (1)
Analytical Food Chemistry, University of Stuttgart, Germany (1)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
Associate Professor, Head Cancer Proteomics Group, University of Queensland Diamantina Institute, Woolloongabba, QLD, 4102 (1)
Bacterial Cell Factories, Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University of Munich (TUM) Gregor-Mendel-Straße 4 85354 Freising GERMANY (1)
Biochemistry Center Heidelberg (BZH) INF 328 69120 Heidelberg (1)
Biochemistry Center Heidelberg University of Heidelberg Germany (1)
Biognosys AG, Schlieren, Switzerland (1)
Biological Oceanography Division, CSIR-National Insititute of Ocenography (1)
Bioprocess Engeneering, IVT, Otto-von-Guericke University, Magdeburg, Germany (1)
CECAD Excellent in Aging Research Cluster of Excellence for Aging Research at the University of Cologne Joseph-Stelzmann-Straße 26 50931 Cologne (1)
CR Université Grenoble Alpes, Institute for Advanced Biosciences, Inserm U1209, CNRS UMR 5309, Grenoble, France (1)
Caprion Biosciences Inc. (1)
Cecad, Department of Genetics, University of Cologne (1)
Cedars-Sinai Heart Institute (1)
Center for Genomic Integrity, Institute for Basic Science, Ulsan 44919, Republic of Korea (1)
Center of Excellence in Systems Biology, Faculty of Medicine, Chulalongkorn University, Bangkok 10330, Thailand (1)

Tags

xref:PubMed:37541197 (1)

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Effects of pulp and paper mill effluents on gene expression in the fathead minnow hypothalamus

We evaluated the possible mechanisms by which exposures to pulp and paper mill effluents gene expression in the fathead minnow hypothalamus Keywords: Toxicology Sexually mature fathead minnows were exposed to 100% pulp and paper mill effluents for 5 days. Tanks contained 4 females and 2 males. A ...

ORGANISM(S): Pimephales promelas

2010-07-07 | E-GEOD-17130 | biostudies-arrayexpress

The Manchurian Walnut Genome: Insights into Juglone and Lipid Biosynthesis

BACKGROUND: Manchurian walnut (Juglans mandshurica Maxim.) is a tree with multiple industrial uses and medicinal properties in the Juglandaceae family (walnuts and hickories). J. mandshurica produces juglone, which is a toxic allelopathic agent and has potential utilization value...

2022-05-18 | MTBLS3657 | MetaboLights

Proteomic and metabolomic analysis of Nothapodytes nimmoniana (J. Graham) extracts treatment on HeLa cells

Nothapodytes nimmoniana is a natural source of camptothecin, a known anticancer drug. Stem and leaf extracts of Nothapodytes nimmoniana were studied to assess its in-vitro action on cancer progression events in a cervical cancer cell line, the HeLa. As a well-studied ideal model system, the HeLa has...

ORGANISM(S): Homo sapiens (Human)

2020-04-07 | PXD017375 | Pride

Expression data from C57BL/6J and MRL/MpJ hearts following acute myocardial infarction

The Murphy Roth Large (MRL) mouse, a strain capable of regenerating right ventricular myocardium, has a high post-myocardial infarction (MI) survival rate compared with C57BL6/J (C57) mice. The biological processes responsible for this survival advantage are unknown. We compared acute post-MI gene e...

ORGANISM(S): Mus musculus

2010-05-27 | E-GEOD-19322 | biostudies-arrayexpress

Chemical and microbial characterization of sugarcane mill mud for soil applications.

Not available

S-EPMC9380943 | biostudies-literature

Biosynthesis and characterization of polyhydroxyalkanoates copolymers produced by Pseudomonas putida Bet001 isolated from palm oil mill effluent.

Not available

S-EPMC3447943 | biostudies-literature

Effects of high-temperature stress on gene expression related to photosynthesis in two jujube (<i>Ziziphus jujuba</i> Mill.) varieties.

Not available

S-EPMC11139005 | biostudies-literature

Bulk RNA-seq from Trex1 KO in heart