Min Liang L - OmicsDI

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Transcriptomics (5012)
Unknown (446)
Genomics (379)
Proteomics (209)
Metabolomics (95)
Multiomics (3)

Organisms

Homo sapiens (1665)
Mus musculus (1251)
Saccharomyces cerevisiae (245)
Arabidopsis thaliana (229)
Drosophila melanogaster (193)
Rattus norvegicus (164)
Schizosaccharomyces pombe (81)
Escherichia coli (65)
Caenorhabditis elegans (53)
Candida albicans (53)
Bos taurus (51)
Danio rerio (45)
Rhizobium leguminosarum (30)
Escherichia coli str. K-12 substr. MG1655 (30)
Staphylococcus aureus (27)
Sus scrofa (27)
Pseudomonas putida (24)
Apis mellifera (21)
Mycobacterium tuberculosis (21)
Gallus gallus (21)
Taeniopygia guttata (19)
Bacillus subtilis (18)
Salmonella enterica subsp. enterica serovar Typhimurium (17)
Streptomyces coelicolor (15)
Streptococcus pneumoniae (15)
Pseudomonas aeruginosa (15)
Escherichia coli K-12 (14)
Triticum aestivum (14)
Bombyx mori (12)
Daphnia magna (12)

Repository

biostudies-arrayexpress (5423)
pride (169)
MetaboLights (95)
jPOST (16)
iProX (13)
EGA (12)
MassIVE (4)

Tissue

Cell culture (49)
Epithelial cell (10)
Liver (9)
Brain (6)
Permanent cell line cell (6)
Blood cell (5)
Colon (5)
Kidney (5)
Leaf (5)
Whole body (5)
Blood (4)
Blood plasma (4)
Hepatocyte (4)
Macrophage (4)
T cell (4)
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Heart (3)
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Root (2)
Stem cell (2)
Testis (2)
A549-CR cell (1)
HCT-116 cell (1)
HeLa cell (1)

Disease

Normal (39)
Prostate cancer (6)
Adenocarcinoma (6)
Breast cancer (6)
Breast adenocarcinoma (4)
Rheumatoid arthritis (4)
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Melanoma (3)
Colorectal adenocarcinoma (3)
Breast carcinoma (3)
Neuroblastoma (3)
Infiltrating ductal carcinoma (2)
Squamous Cell Carcinoma (2)
Porphyria NOS (2)
Colorectal cancer (2)
Colon carcinoma (2)
Not infected (2)
Chronic myeloid leukemia (2)
Reference (2)
Obesity (2)
Mammary tumor (2)
Carcinoma (2)
Multiple sclerosis (1)
High risk B-precurser acute lymphoblastic leukemia (1)
Ovarian cancer patient invasive malignant (1)
XCGD (1)
Adenoma (1)
Dermal neurofibroma (1)
Hepatomegaly (1)
Unspecified peripheral T-cell lymphoma (1)

Technology Type

Mass Spectrometry (169)
Shotgun proteomics (87)
Mass spectrometry (77)
Bottom-up proteomics (29)
Affinity purification coupled with mass spectrometry proteomics (20)
Data-dependent acquisition (19)
Chemical cross-linking coupled with mass spectrometry proteomics (12)
Gel-based experiment (12)
Mass spectrometry assay (11)
NMR spectroscopy (9)
Data-independent acquisition (9)
Mass spectrometry imaging (4)
Top-down proteomics (3)
Proteogenomics (2)
SRM/MRM (2)
SWATH MS (2)
All-ion fragmentation (1)
DiaPASEF (1)
HDMSE (1)
MSE (1)

Instrument Platform

Illumina NovaSeq 6000 (205)
NextSeq 500 (85)
Illumina HiSeq 2500 (69)
Illumina HiSeq 4000 (65)
Illumina HiSeq 2000 (54)
NextSeq 550 (38)
Axon GenePix 4000B scanning hardware (32)
Illumina MiSeq (21)
NextSeq 2000 (19)
Axon- GenePix4000B (16)
Scanning hardware (15)
Illumina NovaSeq X (14)
G2565BA DNA microarray scanner [Agilent] (11)
GenePix 4000B [Axon Instruments] (11)
GenePix 4000A [Axon Instruments] (9)
Other (9)
ScanArray scanning hardware (8)
ScanArray 4000 [PerkinElmer] (8)
ScanArray 5000 [PerkinElmer] (8)
ScanArray 4000XL [PerkinElmer] (8)
Chromium 10x (7)
ScanArray Express HT (7)
Illumina HiSeq 1500 (7)
Microcentrifuge (6)
Illumina Genome Analyzer IIx (6)
418 [Affymetrix] (6)
N/A (6)
10x Genomics Chromium (5)
GenePix Personal 4100A [Axon Instruments] (5)
GenePix Professional 4200A [Axon Instruments] (5)

Publication Date

2010 (735)
2013 (596)
2012 (500)
2014 (499)
2011 (498)
2015 (446)
2008 (353)
2016 (309)
2009 (282)
2007 (200)
2005 (153)
2006 (142)
2025 (133)
2022 (127)
2021 (125)
2026 (123)
2023 (96)
2024 (92)
2004 (73)
2020 (69)
2018 (62)
2019 (55)
2017 (42)
2003 (9)
2002 (1)

CHEBI ID

CHEBI:30769 (30)
CHEBI:16335 (27)
CHEBI:16704 (27)
CHEBI:17368 (25)
CHEBI:17596 (25)
CHEBI:17568 (24)
CHEBI:15428 (23)
CHEBI:16708 (23)
CHEBI:17295 (23)
CHEBI:30915 (23)
CHEBI:15756 (22)
CHEBI:15891 (22)
CHEBI:16015 (22)
CHEBI:17895 (22)
CHEBI:18012 (22)
CHEBI:15741 (21)
CHEBI:16027 (21)
CHEBI:16919 (21)
CHEBI:16737 (20)
CHEBI:16750 (20)
CHEBI:28875 (20)
CHEBI:15971 (19)
CHEBI:16414 (19)
CHEBI:16828 (19)
CHEBI:17203 (19)
CHEBI:17562 (19)
CHEBI:30763 (19)
CHEBI:17154 (18)
CHEBI:17351 (18)
CHEBI:18257 (18)

Metabolite Name

Adenosine (21)
Inosine (21)
Adenine (18)
Hypoxanthine (18)
Creatine (17)
Cytidine (16)
Taurine (16)
Creatinine (15)
L-Phenylalanine (15)
L-Tyrosine (15)
Uracil (15)
Uridine (15)
Xanthine (15)
Guanosine (14)
L-Histidine (13)
Thymidine (13)
Uric acid (13)
Indole (12)
L-Tryptophan (12)
L-Valine (12)
Citric acid (11)
Glycine (11)
Guanine (11)
L-Arginine (11)
Cytosine (10)
L-Glutamine (10)
Ornithine (10)
Arachidonic acid (9)
Biocytin (9)
Choline (9)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (3510)
RNA-seq of coding RNA (344)
ChIP-seq (313)
RNA-seq of coding RNA from single cells (207)
Comparative genomic hybridization by array (177)
ChIP-chip by tiling array (163)
ChIP-chip by array (110)
Unknown experiment type (96)
Other (81)
Methylation profiling by array (43)
Transcription profiling by tiling array (36)
Methylation profiling by high throughput sequencing (35)
RNA-seq of total RNA (24)
RNA-seq of non coding RNA (24)
DNA-seq (19)
RNAi profiling by array (18)
Single nucleus RNA sequencing (17)
Animal - High-throughput sequencing (10)
Genotyping by array (10)
Transcription profiling by RT-PCR (10)
MicroRNA profiling by array (10)
Animal - Single-cell sequencing (9)
High-throughput sequencing (9)
Hi-C (9)
CUT&RUN (9)
Cell line - High-throughput sequencing (7)
ATAC-seq (7)
ScATAC-seq (7)
Proteomic profiling by array (7)
Human - High-throughput sequencing (6)

Release Date

2010 (738)
2013 (604)
2014 (506)
2012 (500)
2011 (500)
2015 (456)
2008 (353)
2016 (311)
2009 (283)
2007 (200)
2005 (153)
2022 (151)
2025 (146)
2006 (142)
2021 (137)
2023 (126)
2026 (106)
2024 (104)
2020 (77)
2004 (73)
2018 (71)
2019 (64)
2017 (58)
2003 (9)
2002 (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (13)
The Sixth Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China (6)
1Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Beijing National Laboratory for Molecular Sciences, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China. (2)
CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China. (2)
Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA (2)
Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Division of Infectious Diseases and International Medicine Department of Internal Medicine Morsani College of Medicine University of South Florida (2)
Huazhong Agricultural University (2)
Nanjing University (2)
No. 2 West Yuanmingyuan Road, Haidian District, Beijing (2)
Peking University (2)
The First Affiliated Hospital of Zhejiang University School of Medicine (2)
West China Second University Hospital, Sichuan University (2)
1 Department of Clinical Nutrition, Shanghai Children's Medical Center, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200127, China 2 Clinical Research Center, Shanghai Children's Medical Center, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200127, China (1)
1.Department of Pharmaceutics, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China 2.State Key Laboratory of Natural and Biomimetic Drugs, Beijing 100191, China 3.Beijing Key Laboratory of Molecular Pharmaceutics and New Drug Delivery Systems, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China (1)
1.Department of Pharmaceutics, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China 2.State Key Laboratory of Natural and Biomimetic Drugs, Beijing 100191, China Beijing Key Laboratory of Molecular Pharmaceutics and New Drug Delivery Systems, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China (1)
2The Key Laboratory of Integrated Crop Pest Management of Shandong Province, College of Agronomy and Plant Protection, Qingdao Agricultural University, Qingdao 266109, China (1)
AbbVie Bioresearch Center (1)
AbbVie Bioresearch Center, Worcester, MA 01605, United States (1)
Analytical Research Center for Organic and Biological Molecules, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zu Chong Zhi Road, Shanghai 201203, China (1)
Anhui Province Key Laboratory of Medical Physics and Technology, Institute of Health and Medical Technology, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei, Anhui 230031, P. R. China University of Science and Technology of China, Hefei, Anhui 230026, P. R. China Hefei Cancer Hospital, Chinese Academy of Sciences, Hefei, Anhui 230031, P. R. China Precision Medicine Research Laboratory of Anhui Province, Hefei, Anhui 230088, P. R. China (1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
Beijing National Laboratory for Molecular Sciences, College of Chemistry and Molecular Engineering, Peking University, Beijing, China (1)
Bioanalytical Mass Spectrometry, Max Planck Institute for Multidisciplinary Sciences, Goettingen, Germany (1)
Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Canada (1)
Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (1)
Biomolecular Measurement Division, National Institute of Standards and Technology (NIST) (1)
Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China (1)
CAS Center for Excellence in Molecular Plant Science, Chinese Academic on Science (1)

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L-serine enables reducing the virulence of Acinetobacter baumannii and modulating the SIRT1 pathway to eliminate the pathogen

The emergence of high-virulent Acinetobacter baumannii strains increases the mortality of patients and seriously affects their prognosis, which motivates us to explore novel ways to control such infections. In this study, gas chromatography-mass spectrometry was adopted to explore the me...

2024-01-18 | MTBLS8966 | MetaboLights

L-leucine increases the sensitivity of drug-resistant Salmonella to sarafloxacin by stimulating central carbon metabolism and increasing intracellular reactive oxygen species level (LC-MS positive mode)

The overuse of antibiotics has made public health and safety face a serious crisis. It is urgent to develop new clinical treatment methods to combat drug-resistant bacteria to alleviate the health crisis. The efficiency of antibiotics is closely related to the metabolic state of bacteria. However...

2023-05-02 | MTBLS7711 | MetaboLights

2023-05-02 | MTBLS7713 | MetaboLights

L-Glutamine metabolism and its regulation in C. glutamicum

Corynebacterium glutamicum, a gram-positive soil bacterium used for the industrial production of amino acids such as L-glutamate and L-lysine, is able to use a number of different nitrogen sources, such as ammonium, urea, or creatinine. In this communication, we show that L-glutamine serves as an ex...

ORGANISM(S): Corynebacterium glutamicum ATCC 13032

2010-10-05 | E-GEOD-19779 | biostudies-arrayexpress

Transcriptomic profiling of Salmonella during lag, exponential and stationary phases of growth

Transcriptional profiles during all phases of growth of Salmonella Typhimurium SL1344 were obtained and used to investigate growth phase-dependent alterations in gene expression. Viable count growth curve analysis of the growth system showed a culture lag time of 2.09 hours, and profiles at 4, 20, 4...

ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

2011-12-13 | E-GEOD-22294 | biostudies-arrayexpress

Transcription profiling of hearts from young (2-4 month) and moderately aged (16-18 month) C57/Bl6 male mice subjected to i) 20 min global ischaemia, 60 min reperfusion or ii) 80 min aerobic perfusion/normoxia

Hearts from young (2-4 month) and moderately aged (16-18 month) C57/Bl6 male mice were subjected to i) 20 min global ischaemia, 60 min reperfusion or ii) 80 min aerobic perfusion/normoxia.

ORGANISM(S): Mus musculus

2005-12-31 | E-MEXP-496 | biostudies-arrayexpress

Expression profiling of P. stutzeri A1501 treated with 20mM ammonia shock for 10 min

A whole genome DNA microarray was used to undertake a global transcriptional analysis of nitrogen fixation and ammonium repression in Pseudomonas stutzeri A1501. The aim of this study was to identify the genes that are up-regulated under nitrogen fixation conditions and rapidly down-regulated as soo...

ORGANISM(S): Pseudomonas stutzeri A1501

2010-05-14 | E-GEOD-14775 | biostudies-arrayexpress

Transcription profiling of wild type and L forms of Listeria monocytogenes

To understand gene expression of L forms

ORGANISM(S): Listeria monocytogenes

2010-05-12 | E-MTAB-116 | biostudies-arrayexpress

Shewanella piezotolerans WP3 wild-type strain heat shock for 90 min

The WP3 strains was cultured at 20Â°C and heat shocked at 40Â°C for 90 min. The transcriptional profiles after and before heat shock were compared. Three biological replicates sample and 6 technical replicates for each experiment

ORGANISM(S): Shewanella piezotolerans WP3

2016-06-15 | E-GEOD-82263 | biostudies-arrayexpress

Shewanella piezotolerans WP3 wild-type strain heat shock for 30 min

The WP3 strains was cultured at 20Â°C and heat shocked at 40Â°C for 30 min. The transcriptional profiles after and before heat shock were compared. Three biological replicates sample and 6 technical replicates for each experiment