Miranda J - OmicsDI

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Unknown (2553)
Transcriptomics (591)
Models (68)
Proteomics (64)
Genomics (28)
Metabolomics (8)
Multiomics (2)
Genomic (1)

Organisms

Homo sapiens (483)
Mus musculus (167)
Drosophila melanogaster (11)
Arabidopsis thaliana (9)
Rattus norvegicus (8)
Danio rerio (7)
Bos taurus (7)
Sus scrofa (5)
Caenorhabditis elegans (5)
Macaca mulatta (4)
Saccharomyces cerevisiae (4)
Urocitellus parryii (3)
Notophthalmus viridescens (2)
Bombyx mori (2)
Oryza sativa Indica Group (2)
Oryza sativa (2)
Capra hircus (2)
Ovis aries (2)
Vitis amurensis (1)
Larix kaempferi (1)
Eimeria tenella (1)
Anopheles funestus (1)
Ectocarpus siliculosus (1)
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Castanea mollissima (1)

Repository

biostudies-arrayexpress (603)
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pride (48)
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Tissue

Cell culture (8)
Brain (5)
Blood (3)
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Disease

Chronic lymphocytic leukemia (3)
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Normal (1)
Breast cancer (1)
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Disease free (1)
Factor VIII deficiency (1)
Glioblastoma (1)
Huntington Disease (1)
Prostate adenocarcinoma (1)
Pulmonary tuberculosis (1)
Renal clear cell carcinoma (1)
Theileriasis (1)
Urinary bladder cancer (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (48)
Shotgun proteomics (17)
Bottom-up proteomics (13)
Data-dependent acquisition (10)
Mass spectrometry (6)
Affinity purification coupled with mass spectrometry proteomics (6)
Illumina HiSeq 2000 (3)
Gel-based experiment (3)
Top-down proteomics (2)
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Illumina MiSeq (1)
Mass spectrometry assay (1)
NMR spectroscopy (1)
All-ion fragmentation (1)
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HDMSE (1)
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SWATH MS (1)

Instrument Platform

Illumina HiSeq 2000 (5)
Illumina HiSeq 2500 (3)
GenePix 4000B [Axon Instruments] (2)
NextSeq 500 (2)
LTQ Orbitrap Elite (2)
Orbitrap Eclipse (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - negative - reverse phase (2)
Illumina HiSeq 2000 platform (1)
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Qubit (1)
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Illumina Genome Analyzer II (1)
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Illumina NovaSeq 6000 (1)
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Q Exactive (1)
TimsTOF Pro (1)

Publication Date

2013 (102)
2012 (102)
2010 (81)
2014 (77)
2005 (68)
2015 (65)
2011 (65)
2016 (49)
2009 (27)
2022 (18)
2025 (14)
2026 (13)
2024 (10)
2023 (9)
2007 (9)
2018 (8)
2008 (8)
2019 (6)
2021 (5)
2017 (3)
2006 (1)
2020 (1)

UNIPROT ID/AC

A0PJJ9 (66)
A0PJK1 (66)
A0S0A7 (66)
A6NFM2 (66)
A8K3J4 (66)
A8K761 (66)
A8K7W0 (66)
A8MU28 (66)
B1AK53 (66)
B1AM93 (66)
B2R6S5 (66)
B2RB13 (66)
B2RD24 (66)
B3KNC1 (66)
B3KXN9 (66)
B4DG68 (66)
B4DIA3 (66)
B4DK61 (66)
B4DKS0 (66)
B4DUG1 (66)
B7Z1R0 (66)
B7Z3W8 (66)
B7Z4Y6 (66)
B7Z792 (66)
C9JT23 (66)
C9JZ62 (66)
D3DX95 (66)
D9HTE9 (66)
E5KNH5 (66)
E5KS60 (66)

CHEBI ID

CHEBI:15603 (70)
CHEBI:15428 (69)
CHEBI:15354 (68)
CHEBI:15355 (68)
CHEBI:15698 (68)
CHEBI:10983 (66)
CHEBI:1148 (66)
CHEBI:11805 (66)
CHEBI:11851 (66)
CHEBI:1296 (66)
CHEBI:13705 (66)
CHEBI:15035 (66)
CHEBI:15343 (66)
CHEBI:15361 (66)
CHEBI:15374 (66)
CHEBI:15377 (66)
CHEBI:15379 (66)
CHEBI:15414 (66)
CHEBI:15440 (66)
CHEBI:15467 (66)
CHEBI:15570 (66)
CHEBI:15589 (66)
CHEBI:15636 (66)
CHEBI:15699 (66)
CHEBI:15710 (66)
CHEBI:15740 (66)
CHEBI:15748 (66)
CHEBI:15754 (66)
CHEBI:15893 (66)
CHEBI:15901 (66)

Metabolite Name

L-Glutamine (3)
L-Leucine (3)
L-Tyrosine (3)
5-Methylcytosine (2)
Adenosine (2)
Betaine (2)
CDP-ethanolamine (2)
Creatine (2)
Creatinine (2)
Ergothioneine (2)
Glycine (2)
Guanosine (2)
Histamine (2)
L-Alanine (2)
L-Asparagine (2)
L-Aspartic acid (2)
L-Carnitine (2)
L-Carnosine (2)
L-Lysine (2)
L-Phenylalanine (2)
L-Proline (2)
L-Serine (2)
L-Valine (2)
Nicotinamide (2)
Norvaline (2)
Putrescine (2)
Riboflavin (2)
Sucrose (2)
Tyrosine (2)
Uracil (2)

IsPrivate

False (67)

Model Flag

Non Kinetic (66)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (401)
RNA-seq of non coding RNA (65)
RNA-seq of coding RNA (30)
Transcription profiling by RT-PCR (26)
MicroRNA profiling by array (21)
Other (13)
ChIP-seq (9)
Comparative genomic hybridization by array (8)
Methylation profiling by array (7)
Unknown experiment type (5)
ChIP-chip by tiling array (3)
Transcription profiling by tiling array (3)
MicroRNA profiling by high-throughput sequencing (2)
MicroRNA profiling by high throughput sequencing (2)
Methylation profiling by high throughput sequencing (2)
Animal - High-throughput sequencing (1)
ChIP-chip by array (1)
Genotyping by array (1)
RIP-seq (1)
RNA-seq of total RNA (1)

Release Date

2022 (347)
2025 (299)
2023 (293)
2021 (292)
2024 (262)
2020 (195)
2019 (170)
2015 (151)
2014 (147)
2016 (142)
2013 (141)
2012 (140)
2018 (119)
2017 (114)
2010 (109)
2011 (96)
2026 (42)
2009 (40)
2008 (21)
2007 (15)
2006 (6)
2005 (3)
2004 (3)
2003 (2)
2002 (2)
2001 (2)
1999 (2)
1998 (1)

Lab affiliation

Department of Archaeology, University of York, Heslington, YO10 5DD, United Kingdom (2)
Department of Physiology, Faculty of Pharmacy, University of Valencia, Burjassot, Valencia, Spain (2)
Research Institute for Medicines (iMed.ULisboa), Faculty of Pharmacy, Universidade de Lisboa, Lisbon, Portugal. (2)
Roswell Park Cancer Center Buffalo, NY, USA (2)
Sanquin Research, Amsterdam, NL (2)
University of Texas Medical Branch (2)
BioArCh, Department of Archaeology, University of York, United Kingdom (1)
CNIO (1)
Center for Neuroscience and Cell Biology of the University of Coimbra, Portugal (1)
DIPARTIMENTO DI MEDICINA, CHIRURGIA E ODONTOIATRIA "SCUOLAMEDICA SALERNITANA", University of Salerno (1)
Departamento de Genética Molecular, Instituto de Fisiología Celular, Universidad Nacional Autónoma de México, Mexico City, Mexico. (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (1)
Department of Cell Biology, Physiology and Immunology / GC-11, Maimónides Biomedical Research Institute of Córdoba (IMIBIC) / University of Córdoba (UCO) / University Hospital “Reina Sofía” (HURS). (1)
Department of Chemistry, Columbia University, New York, NY 10027, USA. (1)
Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm 17177, Sweden Max Planck Institute Biology of Ageing - Karolinska Institutet Laboratory, Karolinska Institutet, Stockholm 17177, Sweden (1)
Department of Periodontology, Dental Research Division, Guarulhos University (UnG), Guarulhos, Sāo Paulo 07023-070, Brazil | Dental Science School (Faculdade de Ciências Odontológicas - FCO), Montes Claros, Minas Gerais 39401-303 Brazil. (1)
Dipartimento di Chimica, Sapienza Università di Roma, Roma, Italy (1)
Evotec (München) GmbH Anna-Sigmund-Str. 5 82061 Neuried Germany (1)
Experimental Pathology and Therapeutics Group, IPO Porto Research Center (CI-IPOP), Portuguese Oncology Institute (IPO Porto), 4200-072 Porto, Portugal (1)
Figueiredo Lab, Instituto de Medicina Molecular, Lisbon, Portugal (1)
Head Proteomics Group, Leiden University Medical Center, Center for Proteomics and Metabolomics, PO Box 9600, Postal zone P1-Q, 2300 RC Leiden, The Netherlands (1)
Head of Mass Spectrometry Laboratory, Brazilian Biosciences National Laboratory (LNBio), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, SP, Brazil. (1)
Head of the Curie Institute Mass Spectrometry Platform (1)
Instituto Carlos Chagas, Fundação Oswaldo Cruz (Fiocruz), Curitiba, Brazil (1)
Instiute for Microbiology (1)
Laboratory of Cell Biology, Cell and Developmental Biology Center, National Heart, Lung and Blood Institute, National Institutes of Health, USA (1)
Laboratory of mass spectrometry, Sanquin Research, Amsterdam, NL (1)
Laboratório de Microbiologia Celular, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro, Brazil (1)
Leiden University Medical Center |Center for Proteomics and Metabolomics | The Netherlands (1)
Molecular Oncology Lab, Hospital Universitario La Paz-IdiPAZ, Madrid, Spain (1)

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Miranda mediates asymmetric protein and RNA localization in the developing nervous system.

Not available

S-EPMC316902 | biostudies-literature

aPKC-mediated displacement and actomyosin-mediated retention polarize Miranda in Drosophila neuroblasts.

Not available

S-EPMC5783611 | biostudies-literature

Transcription profiling of developing pea cotyledons over-expressing VfAAP1

Nitrogen application to legume seeds regulates seed metabolism and composition. In order to improve nitrogen flux into the embryo, the Vicia faba amino acid permease VfAAP1 (Miranda et al. Amino acid permeases in developing seeds of Vicia faba L.: expression precedes storage protein synthesis and is...

ORGANISM(S): Pisum sativum

2008-05-01 | E-MEXP-1557 | biostudies-arrayexpress

Genome-wide microRNA expression induced by TNF

We sequenced microRNAs from bone marrow derived macrophages derived from the control (WT) and RBP-J conditional knockout mice (RBP-J KO; Rbpjf/f; LysM Cre). Examination of differential microRNA expression levels induced by TNF as well as regulated by RBP-J in bone marrow derived macrophages.

ORGANISM(S): Mus musculus

2016-07-22 | E-GEOD-72966 | biostudies-arrayexpress

Maintenance of Miranda Localization in Drosophila Neuroblasts Involves Interaction with the Cognate mRNA.

Not available

S-EPMC5526833 | biostudies-literature

The structural basis of Miranda-mediated Staufen localization during Drosophila neuroblast asymmetric division.

Not available

S-EPMC4600727 | biostudies-literature

Spontaneous restoration of functional β-cell mass in obese SM/J mice.

Not available

S-EPMC7592878 | biostudies-literature

Sapap3 deletion causes dynamic synaptic density abnormalities: a longitudinal [¹¹C]UCB-J PET study in a model of obsessive-compulsive disorder-like behaviour.