Sort   by:  
 Page size 
MetabolomicsGNPS - Experimental validation of a central carbon metabolic model in Aspergillus niger to enable metabolic engineering of a fungal cell factory
The influence of selected pentose catabolic pathway (PCP) deletion strains on growth of plant biomass and re-routing of sugar catabolism was addressed to gain a better understanding of the flexibility of the fungus Aspergillus niger in using plant biomass-derived monomers. The transcriptome, metabol...
ORGANISM(S): Aspergillus Niger (ncbitaxon:5061) 
2020-12-17 | MSV000086614 | GNPS
ProteomicsExperimental validation of a central carbon metabolic model in Aspergillus niger to enable metabolic engineering of a fungal cell factory
The influence of selected pentose catabolic pathway (PCP) deletion strains on growth of plant biomass and re-routing of sugar catabolism was addressed to gain a better understanding of the flexibility of the fungus Aspergillus niger in using plant biomass-derived monomers. The transcriptome, metabol...
ORGANISM(S): Aspergillus Niger (ncbitaxon:5061) 
2020-12-17 | MSV000086614 | MassIVE
ProteomicsProteomics of human peripheral blood mononuclear cells under normal circadian cycle and under a simulated night shift
Proteomic data from human peripheral blood mononuclear cells (PBMCs). Samples taken over a 24 hour constant light and diet following 3 days of normal day shift cycle or a night shift - circadian misaligned schedule where sleep and wake cycles were reversed. Time points (in clock time) 1, 7, 14, 21 h...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2023-10-05 | MSV000093054 | MassIVE
ProteomicsMetabolic characterization of two white-rot fungi in diverse cultivation environments reveals biotechnologically relevant biosynthetic pathways
Two white-rot fungi, Trametes versicolor and Gelatoporia subvermispora, were cultivated in different environments - agitation and static incubation modes and variations in the level of antioxidants - during the conversion of a lignin-related aromatic compound and cellobiose. Both incubation mode and...
ORGANISM(S): Gelatoporia Subvermispora (ncbitaxon:42742) Trametes Versicolor (ncbitaxon:5325) 
2024-08-05 | MSV000095519 | MassIVE
ProteomicsSingle-cell proteomics of Arabidopsis leaf mesophyll protoplasts in the context of drought stress
We followed the Arabidopsis tape-sandwich protocol to isolate the leaf protoplast enriched with palisade mesophyll cells. Briefly, control and WD-stressed Arabidopsis rosette leaves were placed on 3M tape, and abaxial cell layers were peeled off by gently removing the tape, thereby exposing the adax...
ORGANISM(S): Arabidopsis Thaliana (ncbitaxon:3702) 
2024-06-18 | MSV000095072 | MassIVE
ProteomicsSoil metaproteomics data analysis based on de novo sequencing with the deep learning-based Kaiko model
We generated a protein database directly from soil metaproteomic data by identifying the microbial composition using the Kaiko model's de novo sequencing methods. We first analyzed the mass spectra de novo (without a database), identifying species from the observed peptides. We next gathered full p...
ORGANISM(S): Environmental Samples <bacteria> (ncbitaxon:48479) 
2020-10-20 | MSV000086336 | MassIVE
ProteomicsHuman coronavirus-229E infection alters the structure of host RNA processing complexes
The purpose of this experiment was to evaluate the human host cellular response to wild-type human coronavirus strain 229E (HCoV-229E)(ncbitaxon:11137) infection. Sample data was obtained for mock and infected (MOI 3) immortalized human lung epithelial cells (A549), immortalized human lung fibroblas...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2024-11-05 | MSV000096303 | MassIVE
MetabolomicsSalmonella Modulates Metabolism during Growth under Conditions that Induce Expression of Virulence Genes
Salmonella enterica serovar Typhimurium (S. Typhimurium) is a facultative pathogen that uses complex mechanisms to invade and proliferate within mammalian host cells. To investigate possible contributions of metabolic processes to virulence in S. Typhimurium grown under conditions known to induce ex...
2013-05-02 | MTBLS35 | MetaboLights
ProteomicsAutomated mass spectrometry imaging of over 2000 proteins from tissue sections at 100-um spatial resolution
Imaging mass spectrometry is a powerful emerging tool for mapping the spatial distribution of biomolecules across tissue surfaces. Here the authors showcase an automated technology for deep proteome imaging that utilizes ultrasensitive microfluidics and a mass spectrometry workflow to analyze tissue...
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2019-10-04 | MSV000084421 | MassIVE
ProteomicsTime-resolved Proteome and Metabolome Profiling of Normal Lung Development
Proteomics data from mouse lung; performing unbiased protein and metabolite profiling for normal lung development
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2017-06-22 | MSV000081190 | MassIVE
Sort   by:  
 Page size