Sort   by:  
 Page size 
TranscriptomicsTranscriptome-based characterization of the interactions between Saccharomyces cerevisiae and Lactobacillus delbrueckii subsp. bulgaricus in lactose-grown chemostat co-cultures
The present study aims to explore chemostat-based transcriptome analysis of mixed cultures by investigating interactions between the yeast S. cerevisiae and the lactic acid bacterium Lb. bulgaricus . S. cerevisiae and Lb. bulgaricus are both frequently encountered in kefir, a fermented dairy product...
ORGANISM(S): Saccharomyces cerevisiae 
2013-08-22 | E-GEOD-45776 | biostudies-arrayexpress
TranscriptomicsAdaptation of Bacillus subtilis carbon core metabolism to simultaneous nutrient limitation and osmotic challenge
Here, we investigated for the first time the systems-wide response of B. subtilis to different simultaneous stresses, i.e. nutrient limitation and high osmolarity. To address the anticipated complexity of the cellular response networks, we combined chemostat experiments under conditions of carbon li...
ORGANISM(S): Bacillus subtilis 
2014-03-31 | E-GEOD-53333 | biostudies-arrayexpress
Genomics
Effect of neutralizer on lactic acid fermentation of mixed carbon sources
PRJNA1406494 | ENA
MetabolomicsMass spectrometry imaging of phosphatidylcholine metabolism in lungs administered with therapeutic surfactants and isotopic tracers

Mass spectrometry imaging (MSI) visualises molecular distributions throughout tissues but is blind to dynamic metabolic processes. Here, MSI with high mass resolution together with multiple stable isotope labelling provided spatial analyses of phosphatidylcholine (PC) metabolism in mouse lungs. D...

2020-10-30 | MTBLS2075 | MetaboLights
ProteomicsCo-utilization of sugar and aromatic carbons in Pseudomonas putida
Pseudomonas species thrive in different nutritional environments and can catabolize divergent carbon substrates. These capabilities have important implications for the role of these species in natural and engineered carbon processing. However, the metabolic phenotypes enabling Pseudomonas to utilize...
ORGANISM(S): Pseudomonas putida 
2021-09-08 | PXD013605 | Pride
Mixed-carbon metabolism Proteomics Metabolomics Benzoate Metabolic flux Pseudomonas Glucose Bacterial metabolism Fluxomics Metabolic regulation 
TranscriptomicsCcpA, a Pleiotropic Key Regulator in Butanol-producing Clostridium acetobutylicum ATCC 824
Clostridium acetobutylicum is a typical bacterium of major importance to industrial butanol production. In order to dissect the regulatory network pertaining to the industrial application of this bacterium, catabolite control protein A (CcpA) was investigated for its global function by DNA microarra...
ORGANISM(S): Clostridium acetobutylicum 
2012-08-30 | E-GEOD-33364 | biostudies-arrayexpress
TranscriptomicsGrowth in a multispecies biofilm results in remodelling of central metabolism
Multispecies biofilms are the predominant form of bacterial growth in natural and human-associated environments. Although the pathways involved in monospecies biofilm have been well characterized, less is known about the metabolic pathways and emergent traits of a multispecies biofilm community. Her...
ORGANISM(S): Pseudomonas aeruginosa PAO1 Klebsiella pneumoniae KP-1 Pseudomonas protegens Pf-5 
2022-10-07 | GSE214543 | GEO
ProteomicsAnaerobic microbial metabolism of dichloroacetate
Anaerobic degradation of dichloroacetate (DCA) in the environment is not well understood. Recently, a microbial mixed culture (RM) was derived from pristine freshwater sediment enriched with dichloromethane (CH2Cl2, DCM) as the sole energy source under anoxic conditions. RM comprises of Candidatus D...
ORGANISM(S): Candidatus Dichloromethanomonas Elyunquensis Strain Rm 
2020-11-25 | MSV000086520 | MassIVE
GenomicsGrowth in a multispecies biofilm results in remodelling of central metabolism
Growth in a multispecies biofilm results in remodelling of central metabolism
PRJNA885837 | ENA
TranscriptomicsThe IHF regulon of exponentially growing Pseudomonas putida cells
Integration host factor (IHF) sites are largely absent from intergenic regions of ORFs encoding central metabolic functions in Pseudomonas putida mt-2. To gain an insight into this unequal distribution of otherwise abundant IHF-binding sequences, the transcriptome of IHF-plus and IHF-minus cells gro...
ORGANISM(S): Pseudomonas putida 
2012-07-24 | E-GEOD-23499 | biostudies-arrayexpress
Sort   by:  
 Page size