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Genomicsmice cecum microbiome
mice cecum microbiome Metagenome
PRJNA1257837 | ENA
TranscriptomicsInterplay of host microbiota, genetic perturbations, and inflammation promote local development of intestinal neoplasms in mice
The preferential localization of some neoplasms, such as serrated polyps, in specific areas of the intestine suggests that non-genetic factors may be important for their development. To test this hypothesis, we took advantage of transgenic mice that expressed HB-EGF throughout the intestine, but dev...
ORGANISM(S): Mus musculus 
2014-02-12 | E-GEOD-47735 | biostudies-arrayexpress
ProteomicsTime-resolved metaproteomic profiling of mouse cecum microbiome incubations under 12C and 13C-inulin conditions
This dataset contains label-free LC-MS/MS measurements of mouse cecum microbiome incubation samples collected from 1-year-old mice and analyzed across a time course under control and 13C-inulin treatment conditions. Samples were collected at 0, 4, 8, 12, 16, 20, and 24 hours with three biological re...
ORGANISM(S): gut metagenome 
2026-09-13 | PXD076077 | Pride
Control Gut microbiome Stable isotope probing Label-free proteomics Mouse cecum microbiome Time course 13c-inulin Dda Metaproteomics Orbitrap fusion 
GenomicsGut microbiome fecal cecum samples
Gut microbiome fecal cecum samples metagenome
PRJNA1074720 | ENA
ProteomicsMouse Proteomics-SIP Experiment (OSU and OU)
Effects of Dietary Protein Supplementation on Mouse Microbiome
ORGANISM(S): Mus musculus (Mouse) 
2026-08-07 | PXD080386 | Pride
Microbiome Cecum Prebiotic 
MetabolomicsMetatranscriptomic Analysis of the Mouse Gut Microbiome Response to the Persistent Organic Pollutant 2,3,7,8-Tetrachlorodibenzofuran
Not available
ORGANISM(S): Mus musculus 
ST001299 | MetabolomicsWorkbench
MetabolomicsThe murine lung microbiome is dysbalanced by the human pathogenic fungus Aspergillus fumigatus resulting in enrichment of anaerobic bacteria
Here, we report significant changes in the composition of the lung microbiome and metabolome of mice under immune suppression, infection of immunosuppressed mice with virulent and avirulent strains of the clinically important human-pathogenic fungus Aspergillus fumigatus, and treatment with the clin...
2025-07-04 | MTBLS12262 | MetaboLights
GenomicsEffect of morphine treatment on microbiome in the context of microbial transplant.
Morphine causes microbial dysbiosis. In this study we focused on restoration of native microbiota in morphine treated mice and looked at the extent of restoration and immunological consequences of this restoration. Fecal transplant has been successfully used clinically, especially for treating C. di...
ORGANISM(S): Mus musculus domesticus 
2016-06-01 | E-MTAB-3723 | biostudies-arrayexpress
TranscriptomicsSpecific modulation of mucosal immune response, tolerance and proliferation in mice colonized with A. muciniphila
Epithelial cells of the mammalian intestine are covered with a mucus layer that prevents direct contact with intestinal microbes but also constitutes a substrate for mucus-degrading bacteria. To study the effect of mucus degradation on the host response, germ-free mice were colonized with Akkermansi...
ORGANISM(S): Mus musculus 
2011-09-20 | E-GEOD-18587 | biostudies-arrayexpress
TranscriptomicsGut-derived short-chain fatty acids are vividly assimilated into host carbohydrates and lipids
Acetate, propionate and butyrate are the main short-chain fatty acids (SCFAs) that arise from the fermentation of fibers by the colonic microbiota. While many studies focus on the regulatory role of SCFAs, their quantitative role as a catabolic or anabolic substrate for the host has received relativ...
ORGANISM(S): Mus musculus 
2013-10-21 | E-GEOD-45926 | biostudies-arrayexpress
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