Mrna export - OmicsDI

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Mass Spectrometry (69)
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See manuscript (1)
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CHEBI ID

CHEBI:143243 (3)
CHEBI:16708 (3)
CHEBI:16566 (3)
CHEBI:7916 (3)
CHEBI:18050 (3)
CHEBI:17596 (3)
CHEBI:17368 (3)
CHEBI:30769 (3)
CHEBI:83569 (2)
CHEBI:29707 (2)
CHEBI:9768 (2)
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CHEBI:79824 (2)
CHEBI:172589 (2)
CHEBI:144843 (2)
CHEBI:6144 (2)
CHEBI:17574 (2)
CHEBI:27407 (2)
CHEBI:61707 (2)
CHEBI:165380 (2)

Metabolite Name

Pantothenic acid (3)
L-Glutamine (3)
Inosine (3)
Hypoxanthine (3)
Iclaprim (2)
Homaline (2)
4-hydroxyphenylpyruvic acid (2)
3-furoic acid (2)
10-hydroxydecanoic acid (2)
Alpha-d-glucose (2)
N5-Acetyl-N2-gamma-L-glutamyl-L-ornithine (2)
Endomorphin-2 (2)
Norophthalmic acid (2)
Kolanone (2)
Americine (2)
Oxidized dinoflagellate luciferin (2)
S-(9-hydroxy-PGA1)-glutathione (2)
Myristyl sulfate (2)
LysoPE(0:0/20:5(5Z,8Z,11Z,14Z,17Z)) (2)
Cysteineglutathione disulfide (2)
Probucol (2)
Valclavam (2)
Ziprasidone (2)
Cinnamoylglycine (2)
Mitoxantrone (2)
Kinetin (2)
Glucose 6-phosphate (2)
Adenosine monophosphate (2)
Pendimethalin (2)
Palmitoleic acid (2)

IsPrivate

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First Public Date

2026 (47)
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2014 (40)
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2013 (15)
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2017 (9)
2018 (7)
2015 (5)

Classification

bacteria (3)
protozoa (2)
fungi (1)

Modelling Approach

Ordinary differential equation model (2)

Study type

Transcription profiling by array (172)
RNA-seq of coding RNA (45)
Other (15)
Unknown experiment type (11)
ChIP-seq (6)
Transcription profiling by tiling array (5)
ChIP-chip by tiling array (4)
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RNA-seq of non coding RNA (4)
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ChIP-chip by array (2)
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Genotyping by array (1)
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RIP-seq (1)
Ribo-seq (1)
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Release Date

2013 (90)
2010 (86)
2011 (82)
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2014 (75)
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2007 (30)
2005 (25)
2006 (19)
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2003 (13)
2004 (8)
2000 (8)
2002 (7)
2001 (7)
1999 (4)
1997 (4)
1998 (2)

Lab affiliation

National Health Research Institutes, Taiwan (3)
Biochemistry and Molecular Biology Department, Eberly College of Science, Pennsylvania State University, University Park, PA, USA. (2)
Head of Drug Discovery and Evaluation Charles University in Prague, BIOCEV Průmyslová 595 252 50 Vestec Czech Republic (2)
IMBA - Institute of Molecular Biotechnology Dr. Bohrgasse 3 1030 Vienna Austria (2)
Institute of Molecular Biology (2)
2Collaborative Center for Translational Mass Spectrometry, Translational Genomics Research Institute, Phoenix, AZ, USA (1)
Adelaide Medical School Faculty of Health and Medical Sciences University of Adelaide (1)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine 269 Campus Drive CCSR 3205b Stanford, CA 94305, USA (1)
Bioanalytical Mass Spectrometry Group, Max-Planck-Institute for Multidisciplinary Sciences, Germany; Bioanalytics, Department of Clinical Chemistry, University Medical Center Göttingen, Germany (1)
Cancer Research UK Cambridge Institute University of Cambridge Li Ka Shing Centre Cambridge CB2 0RE United Kingdom (1)
Cellular Proteomics, Helmholtz Centre for Infection Research, Braunschweig, Germany (1)
Charles University in Prague Faculty of Science, Department of Parasitology BIOCEV Průmyslová 595 252 50 Vestec Czech Republic (1)
Department of Biochemistry, Emory University, Atlanta, GA, USA Department of Neurology, Emory University School of Medicine, Atlanta, GA, USA (1)
Department of Computational, Cellular, Integrative Biology (DeCIBIO), University of Trento 38123, TN, Italy (1)
Department of Genetics, Stanford School of Medicine, USA (1)
Department of Medicine, Columbia University Irving Medical Center (1)
Department of Microbiology & Molecular Genetics University of California, Irvine Irvine, California, 92697 USA (1)
Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA Department of Molecular Medicine, The Scripps Research Institute, Jupiter, FL 33458, USA (1)
Department of Oncology, University of Oxford, Oxford, Oxfordshire, OX3 7DQ, UK (1)
Department of Structural Cell Biology, Max Planck Institute of Biochemistry, Am Klopferspitz 18, Martinsried, 82152 Munich, Germany. (1)
Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD/NIH) Section on Cell Cycle Regulation Building 49, Room 5A30 49 Convent Drive Bethesda, MD 20892-4480 (1)
European Molecular Biology Laboratory, Grenoble Cedex 9, France. Tel: +(33)476207238 Email: cusack@embl.fr (1)
Faculty of health Science. University of Copenhagen (1)
Francis Crick Institute 1 Midland Road London NW1 1AT (1)
Head of Drug Discovery and Evaluation Center for Research of Pathogenicity and Virulence of Parasites Charles University in Prague, BIOCEV Průmyslová 595 252 50 Vestec Czech Republic phone: +420 325 873 966 (1)
Hong Kong Baptist University (1)
Immunology Research Center, National Health Research Institutes (1)
Institut Jacques Monod, UMR7592 CNRS-Université Paris Diderot, Sorbonne Paris Cité, F-75205 Paris, France (1)
Institute of Biochemistry II, Faculty of Medicine, Goethe University, Frankfurt am Main, Germany. (1)
Institute of Cancer Stem Cell, Cancer Center, Dalian Medical University, Dalian, China (1)

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Budding yeast mRNA export and processing factors

This SuperSeries is composed of the following subset Series: GSE30703: Budding yeast mRNA poly( A) site mapping GSE30705: Budding yeast mRNA export and processing factor localization Refer to individual Series

ORGANISM(S): Saccharomyces cerevisiae

2011-09-24 | E-GEOD-30706 | biostudies-arrayexpress

Knockdown of SR protein family in P19 cells and RNA-seq of cytoplasmic and whole cell polyA+ RNA

Our data suggest that all SR proteins contribute to mRNA export via NXF1. To identify endogenous export targets we depleted all seven SR proteins individually from P19 WT cells prepared cytoplasmic fractions. We sequenced the cytoplasmic fraction and as a control whole celll RNA from the identical s...

ORGANISM(S): Mus musculus

2016-03-07 | E-GEOD-69733 | biostudies-arrayexpress

Budding yeast mRNA export and processing factor localization

The yeast mRNA export adaptor Yra1 binds the Pcf11 subunit of cleavage-polyadenylation factor CF1A linking export to 3'-end formation. We found a surprising consequence of this interaction is that Yra1 influences cleavage-polyadenylation. Yra1 competes with the CF1A subunit, Clp1, for binding to Pcf...

ORGANISM(S): Saccharomyces cerevisiae

2011-09-24 | E-GEOD-30705 | biostudies-arrayexpress

THOC5, a member of the mRNA export complex, is essential for hematopoiesis in vivo and is required for CSF-1 induced macrophage differentiation

THOC5, a member of the mRNA export complex, is essential for hematopoiesis in vivo and is required for CSF-1 induced macrophage differentiation, thereby playing a key role in the mRNA export of immediate early genes induced by CSF-1 stimulation. Hematopoiesis, growth, differentiation, and commitment...

ORGANISM(S): Mus musculus

2013-12-24 | E-GEOD-41170 | biostudies-arrayexpress

RNAi knock down of export factors in Drosphila Schneider cell lines

Six different endogenous Drosophila proteins (all potential export factors) have been inactivated using RNAi and leptomycin B (LMB) treatments. Five different endogenous Drosophila proteins (all potential export factors) have been targeted by RNAi. The effect on mRNA export is analyzed by monitoring...

ORGANISM(S): Drosophila melanogaster

2003-05-15 | E-MEXP-4 | biostudies-arrayexpress

The mRNA export receptor NXF1 coordinates transcriptional dynamics, alternative polyadenylation and mRNA export

PRJNA482996 | ENA

Budding yeast mRNA poly(A) site mapping

ORGANISM(S): Saccharomyces cerevisiae

2011-09-24 | E-GEOD-30703 | biostudies-arrayexpress

Identification and function of components from a divergent mRNA export pathway in trypanosomes

mRNA export is central to gene regulation and expression. In trypanosomes, transcription is polycistronic, all mRNAs are processed by trans-splicing and export is mediated by non-canonical mechanisms. We have described several conserved mRNA export pathway components in Trypanosoma cruzi, including ...

ORGANISM(S): Trypanosoma cruzi Dm28c

2022-02-07 | PXD028072 | Pride

HOS1 versus hos1 mRNA sequencing

Sequencing of mRNA extracted from 14 day old Columbia and hos1-3 seedlings grown at 22C 12:12 light dark Cold acclimation has been shown to be attenuated by the degradation of the INDUCER OF CBF EXPRESSION1 protein by the E3 ubiquitin ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES1 (HOS1). H...

ORGANISM(S): Arabidopsis thaliana

2016-07-21 | E-GEOD-84606 | biostudies-arrayexpress

The Deubiquitylase Ubp15 Couples Transcription to mRNA Export

PRJNA646983 | ENA

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