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ProteomicsMspire-Simulator: LC-MS shotgun proteomic simulator for creating realistic gold standard data - HEK cell lysate
The most important step in any quantitative proteomic pipeline is feature detection (aka peak picking). However, generating quality hand-annotated data sets to validate the algorithms, especially for lower abundance peaks, is nearly impossible. An alternative for creating gold standard data is to si...
ORGANISM(S): Homo sapiens (Human) 
2020-01-24 | PXD000477 | Pride
Human Ms-simulator Hek-293t Fasp 
ProteomicsInsilico TOF top-down proteomics datasets generated using FTMS simulator (Spectroswiss)
This dataset consists of in silico generated TOF top-down proteomics spectra created using the FTMS simulator software (Spectroswiss). The simulated datasets are designed to evaluate FDR estimation in spectral deconvolution. Protein sequences were used to generate MS datasets with varying resolution...
ORGANISM(S): Homo sapiens (Human) 
2026-03-09 | PXD063631 | Pride
Ftms simulator In silico Human proteins Deconvolution Top-down proteomics Orbitrap 
ProteomicsIn silico Orbitrap top-down proteomics datasets generated using FTMS simulator (Spectroswiss)
This dataset consists of in silico generated Orbitrap top-down proteomics spectra created using the FTMS simulator software (Spectroswiss). The simulated datasets are designed to evaluate false discovery rate (FDR) estimation in spectral deconvolution workflows. Protein sequences were used to genera...
ORGANISM(S): Homo sapiens (Human) 
2026-03-09 | PXD063573 | Pride
Ftms simulator In silico Human proteins Deconvolution Top-down proteomics Orbitrap 
ModelsWu2006_K+Channel
The model is described in the paper by Wu and Chang (2006). Diethyl pyrocarbonate, a histidine-modifying agent, directly stimulates activity of ATP-sensitive potassium channels in pituitary GH3 cells. Biochem Pharmacol. 71(5): 615-23. The unit of time is ms, and the ...
2024-09-02 | BIOMD0000000124 | BioModels
UnknownMeasuring Stress and Perceptions for a Virtual Reality-Based Pericardiocentesis Procedure Simulation for Medical Training: Usability Study.
Not available
S-EPMC12303137 | biostudies-literature
UnknownFate and Biological Activity of the Antimicrobial Lasso Peptide Microcin J25 Under Gastrointestinal Tract Conditions.
Not available
S-EPMC6085462 | biostudies-literature
UnknownIn Silico Optimization of Mass Spectrometry Fragmentation Strategies in Metabolomics.
Not available
S-EPMC6836109 | biostudies-literature
UnknownCannabis use and driving-related performance in young recreational users: a within-subject randomized clinical trial.
Not available
S-EPMC6201734 | biostudies-literature
UnknownA new method for modeling coalescent processes with recombination.
Not available
S-EPMC4137079 | biostudies-literature
UnknownMSMS: a coalescent simulation program including recombination, demographic structure and selection at a single locus.
Not available
S-EPMC2916717 | biostudies-literature
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