Msfragger - OmicsDI

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Proteomics (928)
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pride (894)
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Technology Type

Mass Spectrometry (894)
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SWATH MS (24)
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SRM/MRM (7)
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All-ion fragmentation (6)
Metaproteomics (5)
Proteogenomics (2)
MSE (2)

Instrument Platform

Orbitrap Eclipse (9)
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TimsTOF Pro 2 (2)
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Publication Date

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2022 (50)
2021 (27)
2020 (10)
2019 (4)
2018 (4)

First Public Date

2025 (1)

Modification

N6 (3)
4-tetrahydrothiazine-3-carboxylic acid (3)
2x(15)N labeled L-lysine (1)
N6-dimethyl-L-lysine (1)

Release Date

2023 (7)
2025 (6)
2022 (6)
2024 (5)
2021 (4)
2020 (4)
2018 (1)
2017 (1)

Lab affiliation

University of Victoria (15)
Department of Microbiology and Immunology, The University of Melbourne, Victoria, Australia (14)
Umea University (13)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for infection and immunity, Melbourne, 3000, Australia (9)
Center for Structural Biology, Center for Cancer Research, National Cancer Institute (NCI), National Institutes of Health, Frederick, MD 21702-1201, USA (8)
Imperial College London (8)
Mendel University in Brno (7)
Department of Leukemia, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX (7)
Professor and Deputy Director, Center for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya (Deemed to be University), University Road, Deralakatte, Mangalore 575018, India (6)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (6)
Department of Microbiology and Immunology, University of Melbourne, Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia (5)
Baylor College of Medicine (5)
University of York (5)
Biological Chemistry Department David Geffen School of Medicine UCLA (4)
Univ. Bordeaux, CNRS, Bordeaux INP, CBMN, UMR 5248, IECB, F-33600 Pessac, France (4)
Director, Institute of Biochemistry II Goethe University Medical Faculty University Hospital Building 75 Theodor-Stern-Kai 7 60590 Frankfurt am Main Germany (4)
University of Colorado Anschutz Medical Campus (4)
Biological Chemistry Department, David Geffen School of Medicine, UCLA (4)
Department of oncology UNIL CHUV Ludwig Institute for Cancer Research Lausanne Office B25A/04/94 Rue du Bugnon 25a, CH-1005 Lausanne (4)
Medical University of Vienna, Max Perutz Labs, Dr. Bohr-Gasse 9, 1030 Vienna (3)
Department of Plant Biology, Carnegie Institution for Science, Stanford, California, USA (3)
State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, China. (3)
Penn State College of Medicine, Department of Medicine, Penn State Cancer Institute. (3)
Lund University, Faculty of Medicine, Department of Clinical Sciences Lund, Division of Infection Medicine, Lund, Sweden (3)
Department of Biochemistry and Molecular Biology and the Biomedicine Discovery Institute; Monash University; Clayton 3800; Victoria; Australia (3)
University of Pennsylvania, Department of Biology (3)
University of Greifswald, Institute for Microbiology, Department for Microbial Proteomics (3)
Professor Institute of Biochemistry II Goethe University Medical Faculty University Hospital Building 75 Theodor-Stern-Kai 7 60590 Frankfurt am Main Germany (3)
Department of Biomedical Sciences, University of Copenhagen, Denmark (3)
The Dr. Irving and Jeanette Benveniste Chair in Life Sciences, Faculty of Biology, Technion-Israel Institute of Technology, Haifa 32000 ISRAEL (3)

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Re-analysis of glycoproteomics data with MSFragger-Glyco

Reanalysis of submissions PXD011533 and PXD009476 using MSFragger-Glyco mode. Processed MSFragger results files (pepXML) and PSM tables (psm.tsv) supporting MSFragger-Glyco manuscript (Fast and Comprehensive N- and O-glycoproteomics analysis with MSFragger-Glyco. Recent advances in methods for enric...

ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human)

2020-10-06 | PXD021196 | Pride