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MetabolomicsThe correlation between leaf-surface and leaf-tissue secondary metabolites: a case study with pyrrolizidine alkaloids in Jacobaea hybrid plants
Introduction: Usually whole plant or whole leaf extracts are analyzed to study the chemical ecology of insect-plant interactions. For herbivore species the contact with the leaf surface enables them to estimate the quality of the plant. The relationship between the leaf-surface and leaf-tissue secon...
2018-05-01 | MTBLS429 | MetaboLights
ProteomicsProteogenomic analysis of Mycobacterium smegmatis using high resolution mass spectrometry
Biochemical evidence is vital for accurate genome annotation. The integration of experimental data collected at the proteome level using high resolution mass spectrometry allows for improvements in genome annotation by providing evidence for novel gene models, while validating or modifying others. ...
ORGANISM(S): Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) 
2016-03-31 | PXD003500 | Pride
Mass spectrometry Genome annotation Mycobacterium smegmatis Proteogenomics Proteomics 
ProteomicsMetaNovo : an open-source pipeline for probabilistic peptide discovery in complex metaproteomic datasets
Results We compared MetaNovo to published results from the MetaPro-IQ pipeline on 8 human mucosal-luminal interface samples, with comparable numbers of peptide and protein identifications, many shared peptide sequences and a similar bacterial taxonomic distribution compared to that found using a ma...
ORGANISM(S): human gut metagenome 
2023-05-16 | PXD030708 | Pride
Metaproteomics De novo sequencing Probabilistic 
UnknownSimulation of African and non-African low and high coverage whole genome sequence data to assess variant calling approaches.
Not available
S-EPMC8294538 | biostudies-literature
UnknownAnalysis of Structural Variants Previously Associated With ALS in Europeans Highlights Genomic Architectural Differences in Africans.
Not available
S-EPMC10281237 | biostudies-literature
UnknownBlood Pressure and Safety Events With Vericiguat in the VICTORIA Trial.
Not available
S-EPMC8751950 | biostudies-literature
UnknownRenal function and the effects of vericiguat in patients with worsening heart failure with reduced ejection fraction: insights from the VICTORIA (Vericiguat Global Study in Subjects with HFrEF) trial.
Not available
S-EPMC8453520 | biostudies-literature
UnknownA broad survey of DNA sequence data simulation tools.
Not available
S-EPMC7030445 | biostudies-literature
ProteomicsNovel stool-based protein biomarkers for improved colorectal cancer screening
Fecal immunochemical tests (FIT) detecting hemoglobin in stool are widely used for non-invasive colorectal cancer (CRC) screening, but their sensitivity leaves room for improvement. Our aim is to identify novel protein biomarkers in stool that outperform or complement hemoglobin in detecting CRCs an...
ORGANISM(S): Homo sapiens (Human) 
2020-05-26 | PXD007767 | Pride
Human Screening Crc Label-free Stool Biomarker Colorectal cancer 
UnknownSMPD4 regulates mitotic nuclear envelope dynamics and its loss causes microcephaly and diabetes.
Not available
S-EPMC10393401 | biostudies-literature
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