Multidimensional protein identification technology

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Unknown (97)
Proteomics (94)
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Organisms

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Human alphaherpesvirus 1 strain 17 (53)
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Organisms

Mus musculus (2)
Trichoplusia ni (1)
Plasmodium falciparum 3D7 (1)
Corynebacterium glutamicum ATCC 13032 (1)

Repository

pride (54)
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Disease

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Technology Type

Mass Spectrometry (54)
Shotgun proteomics (35)
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Data-independent acquisition (5)
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Affinity purification coupled with mass spectrometry proteomics (2)
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Instrument Platform

LTQ (22)
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Liquid Chromatography MS - negative - hilic (3)
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Instrument (1)
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Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
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CHEBI ID

CHEBI:16525 (4)
CHEBI:73858 (4)
CHEBI:28044 (4)
CHEBI:73024 (4)
CHEBI:36274 (4)
CHEBI:16359 (4)
CHEBI:24813 (4)
CHEBI:16737 (4)
CHEBI:28865 (4)
CHEBI:18089 (4)
CHEBI:73039 (3)
CHEBI:17033 (3)
CHEBI:32365 (3)
CHEBI:30805 (3)
CHEBI:69187 (3)
CHEBI:73074 (3)
CHEBI:16755 (3)
CHEBI:17822 (3)
CHEBI:26271 (3)
CHEBI:25094 (3)
CHEBI:17126 (3)
CHEBI:18186 (3)
CHEBI:16811 (3)
CHEBI:28300 (3)
CHEBI:18257 (3)
CHEBI:43580 (3)
CHEBI:28610 (3)
CHEBI:64489 (3)
CHEBI:28867 (3)
CHEBI:28875 (3)

Metabolite Name

Taurodeoxycholic acid (3)
Cholic acid (3)
Cytidine (3)
Creatinine (3)
Creatine (3)
Hippuric acid (3)
N-acetyl-d-norleucine (2)
5,8,11,14-eicosatetraynoic acid (2)
2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine (phip) (2)
1,3,5-benzenetriol (2)
S-(2,3,4-trihydroxybutyl)mercapturic acid (2)
1h-pyrano[3',4':6,7]indolizino[1,2-b]quinoline-3,14(4h,12h)-dione, 4,11-diethyl-4,9-dihydroxy-, (4s)- (2)
N-acetyltyramine (2)
1-naphthalenesulfonic acid, 8-(phenylamino)- (2)
3-oxo-1,8-octanedicarboxylic acid (2)
6-hydroxyhexanoate (2)
Naringenin-7-o-glucoside (2)
N,n'-diacetylchitobiose (2)
2'-hydroxy-4'-methoxyacetophenone (2)
Dinotefuran (2)
N-acetylsulfamethoxazole (2)
D-tryptophan (2)
5,2'-O-dimethylcytidine (2)
1-monolinoleoyl-rac-glycerol (2)
Prothioconazole (2)
Pro-hyp (2)
L-abrine (2)
7-chloro-3-methylquinoline-8-carboxylic acid (2)
3-ureidopropionic acid (2)
Trans-traumatic acid (2)

First Public Date

2014 (2)
2013 (2)
2016 (1)

Classification

protozoa (1)
bacteria (1)

Study type

Transcription profiling by array (2)
Other (1)
RNA-seq of coding RNA (1)

Release Date

2012 (13)
2009 (10)
2011 (9)
2014 (7)
2013 (7)
2008 (6)
2007 (5)
2020 (4)
2019 (4)
2016 (4)
2015 (3)
2025 (3)
2022 (3)
2017 (3)
2010 (3)
2006 (3)
2002 (2)
2021 (2)
2018 (2)
2004 (2)
2026 (1)
2024 (1)
2023 (1)
2005 (1)
2003 (1)
2001 (1)

Lab affiliation

Univeristy College Dublin (6)
Stowers Institute for Medical Research (5)
Koç University, Department of Molecular Biology and Genetic Cell Biology Lab head (2)
Nanoparticle Systems Engineering Laboratory Department of Mechanical and Process Engineering ETH Zurich, Switzerland (2)
Laboratory of Membrane Biogenesis, University of Bordeaux, France (2)
Departments of Chemistry and Biological Sciences, Vanderbilt University (1)
Biomedical Research in Cancer Stem Cells Group,Pathology Department, Collserola Building, Lab 205,Vall d'Hebron Research Institute (VHIR, Passeig Vall d'Hebron 119-129,Barcelona 08035, Spain. Tel: +34-93-489-4169 FAX: +34-93-274-6708 (1)
Division of Biotechnology, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China (1)
Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA. (1)
Proteomics Core Facility, Sahlgrenska Academy Gothenburg University (1)
Institute of Microbiology, ETH Zurich, Switzerland (1)
Shanghai Jiao Tong University Ming Yu Lab (1)
Institute of Oral Biology Center of Dental Medicine (ZZM) University of Zurich (UZH) (1)
Director | Proteome Exploration Laboratory | Beckman Institute California Institute of Technology Division of Biology and Biological Engineering (1)
ETH Zurich – Institute for Neuroscience, Department of Health Sciences and Technology, Lab of Epigenetics and Neuroendocrinology, Neuroscience Center Zürich (1)
Department of Reproductive Endocrinology - University of Zurich, Switzerland (1)
University of Toronto Translational Biology and Engineering Program, Ted Rogers Centre for Heart Research (1)
Laboratório de Melhoramento Genético Vegetal, Centro de Ciências e Tecnologias Agropecuárias (CCTA), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. (1)
Pediatric Infectious Diseases Molecular Genetics and Microbiology Stony Brook University Life Sciences Building, Rm. 158 Stony Brook, NY 11794-5222 U.S.A. (1)
proteogenomics laboratory (1)
Boston College Department of Chemistry (1)
Koç University, Science,Department of MBGE (1)
Biomedical Research in Cancer Stem Cells, Vall d’Hebron Research Institute (VHIR), Autonomous University of Barcelona, Passeig Vall d’Hebron 119-129, 08035 Barcelona, Spain; (1)
Dept. of Cell and Developmental Biology University of Illinois at Urbana Champaign (1)
Max Planck Institute for the Science of Human History Department of Archaeogenetics (1)
Centre for Infection and Immunity, Queen’s University Belfast, Belfast, Northern Ireland, BT9 7BL, UK. (1)
Section eScience (S.3), Federal Institute for Materials Research and Testing, Berlin, Germany Bioinformatics Unit (MF1), Department for Methods Development and Research Infrastructure, Robert Koch Institute, Berlin, Germany (1)
UC Berkeley MCB department (1)
Institute of Integrative Biology, University of Liverpool (1)
Peptide and Proteomics Division Defence Institute of Physiology and Allied Sciences (DIPAS) Defence Research and Development Organization (DRDO) Lucknow Road, Timarpur Delhi-110054 (1)

Tags

pathogen (2)
xref:PubMed:17486137 (1)
xref:PubMed:12368866 (1)
xref:PubMed:24737727 (1)
xref:PubMed:22334693 (1)
pathogen:protozoan (1)
pathogen:bacterium (1)

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Proteomic view of the Plasmodium falciparum life cycle

The completion of the Plasmodium falciparum clone 3D7 genome provides a basis on which to conduct comparative proteomics studies of this human pathogen. Here, we applied a high-throughput proteomics approach to identify new potential drug and vaccine targets and to better understand the biology of t...

ORGANISM(S): Plasmodium falciparum 3D7

2002-12-22 | E-GEOD-92 | biostudies-arrayexpress

Determination of the protein interactome of the transcription factor Sox2 in embryonic stem cells engineered for inducible expression of four reprogramming factors

Coordinate expression of the somatic cell reprogramming factors Oct4, Sox2, Klf4 and c-Myc within embryonic stem cells preserves the self-renewal of these cells, while allowing for the expression epitope tagged Sox2. Taking advantage of this observation, we engineered embryonic stem cells (i-OSKM-ES...

ORGANISM(S): Mus musculus

2012-02-20 | E-GEOD-34801 | biostudies-arrayexpress

Proteomic analysis of urine exosomes by multidimensional protein identification technology (MudPIT).

Not available

S-EPMC3517144 | biostudies-literature

Identification of the effect of a CRISPR interference knockdown of Borrelia burgdorferi strain B31 BB0838, a outer membrane lipoprotein flippase candidate, on surface lipoprotein secretion using Multidimensional Protein Identification Technology.

To identify the effect of a CRISPR interference knockdown of Borrelia burgdorferi strain B31 BB0838, a outer membrane lipoprotein flippase candidate, on surface lipoprotein secretion using Multidimensional Protein Identification Technology.

ORGANISM(S): Borrelia Burgdorferi B31 (ncbitaxon:224326)

2022-07-27 | MSV000089990 | MassIVE

Proteomic analysis of human aqueous humor using multidimensional protein identification technology.

Not available

S-EPMC2793904 | biostudies-literature

Proteomic analysis of human parotid gland exosomes by multidimensional protein identification technology (MudPIT).

Not available

S-EPMC2693447 | biostudies-literature

RCADiA: simple automation platform for comparative multidimensional protein identification technology.

Not available

S-EPMC2528021 | biostudies-literature

Characterization of the human submandibular/sublingual saliva glycoproteome using lectin affinity chromatography coupled to multidimensional protein identification technology.

Not available

S-EPMC3279195 | biostudies-literature

Deep interactome profiling of membrane proteins by co-interacting protein identification technology.

Not available

S-EPMC5444904 | biostudies-literature

Tandem affinity purification and Multidimensional Protein Identification Technology to identify USP44 interacting proteins

Nuclear extracts were isolated from 293T cells that stably express USP44 fused with N-terminal FLAG and HA affinity tags (FH-USP44), and then analyzed by tandem affinity purification (TAP) followed by Multidimensional Protein Identification Technology (MudPIT) to uncover USP44 associated proteins. T...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

MSV000080144 | MassIVE

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210 Results

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Organisms

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Tissue

Disease

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Instrument Platform

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Metabolite Name

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Classification

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