Murine cell lines

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Unknown (3198)
Transcriptomics (1795)
Genomics (1289)
Proteomics (144)
Other (20)
Metabolomics (13)
Methylation profiling (4)

Organisms

Mus musculus (1043)
Homo sapiens (864)
Arabidopsis thaliana (19)
Rattus norvegicus (17)
Drosophila melanogaster (12)
Gallus gallus (9)
Danio rerio (6)
Canis lupus familiaris (6)
Zea mays (5)
Caenorhabditis elegans (5)
Oryza sativa (4)
Sus scrofa (4)
Glycine max (3)
Saccharomyces cerevisiae (3)
Brassica napus (2)
Trypanosoma brucei (2)
Staphylococcus aureus (2)
Oryza sativa Japonica Group (2)
Viruses (2)
Mycobacterium tuberculosis variant bovis BCG (1)
Theileria annulata (1)
Bifidobacterium bifidum (1)
Theileria parva (1)
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (1)
Teleopsis dalmanni (1)
Aspergillus flavus (1)
Staphylococcus aureus subsp. aureus str. Newman (1)
Cucumis sativus (1)
Francisella tularensis subsp. holarctica LVS (1)
Gossypium hirsutum (1)

Organisms

Mus musculus (654)
Homo sapiens (246)
Salmonella enterica subsp. enterica serovar Typhimurium (2)
Canis lupus familiaris (2)
Peucedanum japonicum (1)
Murine norovirus (1)
unidentified (1)
Mus (1)
synthetic construct (1)
Macaca mulatta (1)
Mus musculus musculus (1)
Mammalia (1)
Pseudomonas aeruginosa PAO1 (1)
Ovis aries (1)

Repository

biostudies-arrayexpress (1405)
ENA (1107)
geo (598)
pride (104)
MassIVE (28)
MetaboLights (11)
EGA (4)
jPOST (3)
GNPS (2)
GPMDB (2)
iProX (1)
PAXDB (1)

Tissue

Cell culture (27)
Brain (12)
Epithelial cell (11)
Lung (9)
B cell (7)
Fibroblast (7)
Colon (5)
Macrophage (5)
Blood cell (4)
Heart (4)
Kidney (4)
Bone marrow (3)
Liver (3)
Melanocyte (3)
Pancreas (3)
Spleen (3)
T cell (3)
Blood (2)
Breast (2)
Cell suspension culture (2)
Embryonic fibroblast (2)
Embryonic stem cell (2)
Nerve cord (2)
Permanent cell line cell (2)
Plasma cell (2)
Stem cell (2)
Testis (2)
Adipose tissue (1)
B-cell lymphoma/leukemia 11B (1)
HeLa cell (1)

Disease

Breast cancer (4)
Acute lymphocytic leukemia (4)
Lung adenocarcinoma (4)
Lymphoma (4)
Pancreatic ductal adenocarcinoma (4)
Normal (3)
Alzheimer's disease (3)
Colon cancer (3)
Disease free (3)
Glioblastoma (2)
Not Available (2)
Acute leukemia (2)
Melanoma (2)
Multiple myeloma (2)
Skin melanoma (2)
HPV positive (1)
Primary effusion lymphoma (PEL) (1)
Non-metastatic melanoma (1)
Bladder cancer (1)
Leukemia (1)
UV inactivated HSV-1 infected (1)
Glioblastoma multiforme (1)
Mixoid liposarcoma (1)
Megakaryoblastic leukemia (1)
Prostate carcinoma (1)
Acute myeloid leukemia (1)
Arrhythmogenic right ventricular cardiomyopathy (1)
B-cell acute lymphoblastic leukemia (1)
B-cell lymphoma (1)
Benign mesothelioma (1)

Technology Type

Mass Spectrometry (104)
Shotgun proteomics (58)
Bottom-up proteomics (22)
Data-dependent acquisition (15)
Affinity purification coupled with mass spectrometry proteomics (13)
Mass spectrometry (6)
SWATH MS (5)
Data-independent acquisition (4)
Mass spectrometry assay (3)
All-ion fragmentation (2)
Gel-based experiment (2)
SRM/MRM (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
NMR spectroscopy assay (1)
NMR spectroscopy (1)
DiaPASEF (1)
HDMSE (1)
Immunopeptidomics (1)
Mass spectrometry imaging (1)

Instrument Platform

NextSeq 500 (25)
Illumina NovaSeq 6000 (24)
Illumina HiSeq 2500 (15)
Illumina HiSeq 4000 (11)
Illumina HiSeq 2000 (10)
NextSeq 550 (6)
Illumina NovaSeq X (5)
NextSeq 2000 (5)
Chromium 10x (2)
GCS3000 (2)
Illumina HiSeq 3000 (2)
10x Chromium v3 (1)
G2565BA Microarray Scanner (1)
Qubit instrument, DNA HS kit (1)
High Sensitivity DNA kit (1)
BioRad SureCell (1)
Illumina NextSeq 500 IMGM (1)
Fluidic Station 450 (1)
BD Fortessa (1)
FS450 (1)
Unspecified (1)
Axon- GenePix4000B (1)
GenePix 4000B [Axon Instruments] (1)
Scanning hardware (1)
FACS Aria-III (1)
Illumina HiSeq X (1)
DNBSEQ-G400 (1)
Illumina MiSeq (1)
Illumina HiSeq 1500 (1)
Impact II (1)

Publication Date

2015 (214)
2013 (201)
2010 (181)
2014 (177)
2012 (164)
2011 (157)
2016 (130)
2026 (103)
2022 (97)
2021 (82)
2025 (79)
2008 (79)
2024 (77)
2023 (74)
2009 (63)
2020 (61)
2018 (59)
2017 (54)
2019 (33)
2007 (30)
2005 (14)
2006 (12)
2004 (10)
2003 (2)

UNIPROT ID/AC

10090.ENSMUSP00000005406 (1)
10090.ENSMUSP00000032399 (1)
10090.ENSMUSP00000050156 (1)
10090.ENSMUSP00000069914 (1)
10090.ENSMUSP00000072775 (1)
10090.ENSMUSP00000078944 (1)
10090.ENSMUSP00000079727 (1)
10090.ENSMUSP00000089336 (1)
10090.ENSMUSP00000090897 (1)
10090.ENSMUSP00000092002 (1)
10090.ENSMUSP00000094869 (1)
10090.ENSMUSP00000098369 (1)
10090.ENSMUSP00000117461 (1)
10090.ENSMUSP00000118564 (1)
10090.ENSMUSP00000123410 (1)
10090.ENSMUSP00000123798 (1)
10090.ENSMUSP00000124523 (1)
10090.ENSMUSP00000132102 (1)
10090.ENSMUSP00000136020 (1)
10090.ENSMUSP00000136153 (1)
10090.ENSMUSP00000136358 (1)
10090.ENSMUSP00000136375 (1)
10090.ENSMUSP00000136544 (1)
10090.ENSMUSP00000137303 (1)
1433B_MOUSE (1)
1433E_MOUSE (1)
1433F_MOUSE (1)
1433G_MOUSE (1)
1433S_MOUSE (1)
1433T_MOUSE (1)

CHEBI ID

CHEBI:15891 (6)
CHEBI:16027 (5)
CHEBI:6650 (4)
CHEBI:18050 (4)
CHEBI:16856 (4)
CHEBI:15741 (4)
CHEBI:17268 (4)
CHEBI:78320 (4)
CHEBI:15428 (4)
CHEBI:18012 (4)
CHEBI:16737 (4)
CHEBI:30769 (4)
CHEBI:17126 (3)
CHEBI:28300 (3)
CHEBI:24898 (3)
CHEBI:15846 (3)
CHEBI:17754 (3)
CHEBI:28044 (3)
CHEBI:16857 (3)
CHEBI:17750 (3)
CHEBI:17050 (3)
CHEBI:18132 (3)
CHEBI:17115 (3)
CHEBI:16264 (3)
CHEBI:32816 (3)
CHEBI:17203 (3)
CHEBI:18019 (3)
CHEBI:17196 (3)
CHEBI:17053 (3)
CHEBI:16449 (3)

Metabolite Name

Taurine (5)
Myo-Inositol (4)
Glycine (3)
Malic acid (3)
Creatine (3)
Creatine phosphate (2)
Lauric acid (2)
Sn-Glycero-3-phosphocholine (2)
O-Phosphocholine (2)
Hypotaurine (2)
Lactic acid (2)
NAD+ (2)
AMP (2)
Glycerol (2)
Lactic acid (2)
Glycolic acid (2)
Betaine (2)
Hexanoic acid (2)
L-Asparagine (2)
L-Threonine (2)
Choline (2)
Nonanoic acid (2)
Decanoic acid (2)
L-Proline (2)
L-Lysine (2)
Citric acid (2)
Succinic acid (2)
Fumaric acid (2)
Alanine (2)
L-Glutamine (2)

First Public Date

2014 (145)
2024 (135)
2025 (129)
2026 (114)
2023 (100)
2021 (98)
2022 (86)
2018 (60)
2020 (57)
2017 (57)
2019 (43)
2016 (37)
2015 (26)
2013 (20)

Classification

bacteria (3)
viruses (1)

Modification

4x(2)H labeled dimethylated residue (1)
N6 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (935)
RNA-seq of coding RNA (158)
ChIP-seq (77)
RNA-seq of non coding RNA (32)
Unknown experiment type (28)
Methylation profiling by array (25)
Comparative genomic hybridization by array (22)
ChIP-chip by tiling array (15)
Other (13)
RNA-seq of coding RNA from single cells (13)
Methylation profiling by high throughput sequencing (13)
DNA-seq (10)
Transcription profiling by tiling array (8)
Transcription profiling by SAGE (7)
ChIP-chip by array (7)
Cell line - High-throughput sequencing (6)
Proteomic profiling by array (6)
Genotyping by array (3)
RNA-seq of total RNA (3)
GRO-seq (2)
High-throughput sequencing (2)
CLIP-seq (2)
Transcription profiling by RT-PCR (2)
ATAC-seq (2)
MicroRNA profiling by array (2)
CUT&RUN (2)
Animal - One-color microarray (1)
Cell line - One-color microarray (1)
Animal - High-throughput sequencing (1)
Proteomic profiling by mass spectrometer (1)

Release Date

2015 (343)
2014 (310)
2023 (289)
2021 (280)
2020 (277)
2013 (274)
2025 (272)
2016 (268)
2022 (260)
2024 (235)
2010 (235)
2011 (234)
2019 (233)
2012 (222)
2018 (215)
2017 (173)
2009 (109)
2008 (102)
2026 (59)
2007 (55)
2004 (30)
2006 (27)
2005 (27)
2002 (13)
2003 (12)
2000 (12)
2001 (10)
1998 (9)
1999 (8)
1997 (6)

Lab affiliation

Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (9)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (2)
Queensland Brain Institute, The University of Queensland, St Lucia Campus (Brisbane), QLD 4072, Australia (2)
1)Department of Biomolecular Medicine, Ghent University, Ghent, Belgium 2)Center for Medical Genetics Ghent, Ghent University, Ghent, Belgium 4)Department of Pharmaceutics, Ghent University, Ghent, Belgium (1)
1Gavin Herbert Eye Institute –Brunson Center for Translational Vision Research, Department of Ophthalmology and Visual Sciences, University of California Irvine, Irvine, CA 92697, USA 2Department of Physiology and Biophysics, University of California Irvine, Irvine, CA 92697, USA 3Department of Chemistry, University of California Irvine, Irvine, CA 92697, USA 4Department of Molecular Biology and Biochemistry, University of California Irvine, Irvine, CA 92697, USA (1)
AmsterdamUMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, The Netherlands (1)
Andalusian Center for Molecular Biology and Regenerative Medicine (CABIMER) - University of Seville (1)
Assistant Professor, Departments of Oncology & Pathology, McGill University Principal Investigator, Cancer Research Program, MUHC-RI 1001 Decarie Blvd, EM2.2218 514.934.1934 ext 76307 Montréal, Canada (1)
Associate Professor, Department of Biomedical Sciences,Affiliated with The Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen. (1)
Biognosys AG (1)
Biosciences instritute, Newcastle university (1)
Biotech Research & Innovation Center (BRIC), University of Copenhagen, Denmark (1)
Biotech Research & Innovation Centre, University of Copenhagen, Denmark (1)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (1)
Cancer Signaling & Microenvironment Program, Fox Chase Cancer Center, Philadelphia, Pennsylvania, United States (1)
Chair of Proteomics and Bioanalytics Technische Universitaet Muenchen Partner Site of the German Cancer Consortium Emil Erlenmeyer Forum 5 85354 Freising Germany (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich (1)
Chemistry Department, University of Minnesota (1)
Complex Carbohydrate Research Center, Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602, USA. (1)
DZNE Munich Neuroproteomics Feodor-Lynen-Str. 17 81377 Munich Germany (1)
Department of Biochemistry, Escola Paulista de Medicina, Federal University of São Paulo, (EPM/UNIFESP), São Paulo, SP, Brazil. (1)
Department of Biological Engineering, Massachusetts Institute of Technology (1)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, 8093, Switzerland (1)
Department of Cellular and Molecular Medicine, University of Copenhagen (1)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (1)
Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA (1)
Department of Immunobiology, University of Lausanne (155 chemin des Boveresses 1066 Epalinges Switzerland) (1)
Department of Immunology and Cell Biology, Faculty of Medecine and Health Sciences, Universite de Sherbrooke, Sherbrooke, Canada (1)
Department of Integrative Biomedical Sciences & Institute of Infectious Disease and Molecular Medicine Faculty of Health Sciences, University of Cape Town Anzio, Observatory Cape Town 7925 South Africa (1)
Department of Laboratory Medicine, Wiita Lab, University of California San Francisco (1)

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Impact of Diabetic Stress Conditions on Renal Cell Metabolome

Diabetic kidney disease is a major complication in diabetes mellitus, and the most common reason for end-stage renal disease. Patients suffering from diabetes mellitus encounter glomerular damage by basement membrane thickening, and develop albuminuria. Subsequently, albuminuria can deteriorate the ...

2019-10-08 | MTBLS1093 | MetaboLights

Metabolomics Identifies Metabolic Markers of Maturation in Human Pluripotent Stem Cell-Derived Cardiomyocytes

Cardiovascular disease is a leading cause of death worldwide. Human pluripotent stem cell-derived cardiomyocytes (hPSC-CMs) hold immense clinical potential and recent studies have enabled generation of virtually pure hPSC-CMs with high efficiency in chemically defined and xeno-free conditions. Despi...

2018-04-24 | MTBLS425 | MetaboLights

Hif1α-Dependent Uncoupling Of Glycolysis Suppresses Tumor Cell Proliferation

Hypoxia-inducible factor-1α (HIF1α) attenuates mitochondrial activity while promoting glycolysis. Paradoxically, it remains unknown why lower glycolysis is compromised in human clear cell renal cell carcinomas (ccRCC), in which HIF1α acts a tumor suppressor by inhibiting cell autonomous proliferatio...

2024-03-15 | MTBLS8901 | MetaboLights

Metabolic Reprogramming in Tumor-Associated Macrophages during Murine Hepatocellular Carcinoma Progression

To investigate the impact of Wdr4 on the metabolic reprogramming of tumor-associated macrophages (TAMs) in hepatocellular carcinoma (HCC), we established an orthotopic HCC model in Wdr4-f/f and Wdr4 conditional knockout (Wdr4-cKO) mice. TAMs were subsequently isolated via flow cytometry-based cel...

2025-09-28 | MTBLS12764 | MetaboLights

Cell of origin epigenetic priming determines susceptibility to Tet2 mutation

Hematopoietic stem cell (HSC) mutations can result in clonal hematopoiesis (CH) with heterogeneous clinical outcomes. Here, we investigated how the cell state preceding Tet2 mutation impacts the pre-malignant phenotype. Using an inducible system for clonal analysis of myeloid progenitors...

2024-04-30 | MTBLS9914 | MetaboLights

Prevalence and characterization of murine leukemia virus contamination in human cell lines.

Not available

S-EPMC4416031 | biostudies-literature

Dietary restriction of cysteine and methionine sensitizes gliomas to ferroptosis and induces alterations in energetic metabolism

Ferroptosis is mediated by lipid peroxidation of phospholipids containing polyunsaturated fatty acyl moieties. Glutathione, the key cellular antioxidant capable of inhibiting lipid peroxidation via the activity of the enzyme glutathione peroxidase 4 (GPX-4), is generated directly from the sulfur-...

2023-01-11 | MTBLS5959 | MetaboLights

Gene expression patterns within cell lines are predictive of chemosensitivity

We generated RNA's and measured expression of 40000 genes using spotted cDNA microarrays from the fifty nine publicly available cell lines of the NCI Developmental Therapeutics Program's NCI60 studies and an additional set of seven cell lines for which GI50 compound sensitivity data were available. ...

ORGANISM(S): Homo sapiens

2008-02-07 | E-GEOD-7947 | biostudies-arrayexpress

Proteomic analysis of extracellular vesicles derived from Merkel cell carcinoma cell lines

Exosomes constitute an evolutionary conserved mechanism of intercellular signaling. Their importance are gaining increasing such as prognostic and diagnostic markers, and potential therapeutic tool. Merkel cell carcinoma (MCC) is an aggressive form of skin cancer with a poor prognosis. There are not...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2016-10-21 | MSV000080262 | MassIVE

Gene regulation in ki-ras transfected murine fibroblasts

Ki-ras gene mutations are involved in the carcinogenesis of acute myeloid leukemia, melanoma and different carcinomas. In order to define potential mutation-specific therapeutic targets, expression profiling analyses were performed using stable transfected NIH3T3 cells carrying different ki-ras gene...

ORGANISM(S): Mus musculus

2010-05-25 | E-GEOD-8372 | biostudies-arrayexpress

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