Murphy K K - OmicsDI

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Unknown (3703)
Transcriptomics (110)
Proteomics (62)
Metabolomics (29)
Genomics (26)
Models (3)

Organisms

Homo sapiens (91)
Mus musculus (58)
Rattus norvegicus (11)
Pseudomonas putida BIRD-1 (5)
Caenorhabditis elegans (4)
Danio rerio (3)
Macaca mulatta (2)
Arabidopsis thaliana (2)
Bombus terrestris (2)
Xenopus tropicalis (2)
Equus caballus (1)
Zea mays (1)
Geobacter sulfurreducens (1)
Solanum tuberosum (1)
Escherichia coli (1)
Saccharomyces cerevisiae (1)
Sus scrofa (1)
Drosophila melanogaster (1)
Camelus dromedarius (1)
Fasciola hepatica (1)
Madurella mycetomatis (1)
Phaeodactylum tricornutum (1)
Pseudomonas [fluorescens] SBW25 (1)
Pseudomonas aeruginosa PAO1 (1)
Stutzerimonas stutzeri (1)

Organisms

Homo sapiens (1)

Repository

biostudies-arrayexpress (117)
pride (58)
MetaboLights (28)
EGA (17)
Cell Collective (3)
MassIVE (3)
geo (1)
GNPS (1)
PanoramaPublic (1)
ENA (1)

Tissue

Brain (6)
Cell culture (6)
Fibroblast (5)
Whole body (5)
Epithelial cell (4)
Blood (3)
Epithelial cell of prostate (3)
Neutrophil (3)
Prostate adenocarcinoma cell line (3)
Colon (2)
Heart (2)
Leukocyte (2)
Lung (2)
Monocyte (2)
Skin (2)
T cell (2)
Aorta (1)
Blood plasma (1)
Bone marrow (1)
Cell suspension culture (1)
Culture medium (1)
Hepatocyte (1)
Macrophage (1)
Permanent cell line cell (1)
Placenta (1)
Plant cell (1)
Raphe nuclei (1)
Root (1)
Skeletal muscle (1)
T-lymphocyte cell line (1)

Disease

Glioblastoma (3)
Prostate carcinoma (3)
Cardiovascular system disease (2)
HPV positive (1)
Pancreatic tumor (1)
Melanoma (1)
Osteosarcoma (1)
Acute leukemia (1)
Acute myeloid leukemia (1)
Adult respiratory distress syndrome (1)
Asbestos-related lung carcinoma (1)
Avian influenza (1)
Bloom syndrome (1)
Colon cancer (1)
Disease free (1)
Fibrolamellar carcinoma (1)
Mental depression (1)
Neuroblastoma (1)
Neurological dysfunction (1)
Parkinson's disease (1)

Technology Type

Mass Spectrometry (58)
Shotgun proteomics (34)
Mass spectrometry (27)
Gel-based experiment (10)
Affinity purification coupled with mass spectrometry proteomics (7)
Bottom-up proteomics (5)
Data-independent acquisition (4)
Data-dependent acquisition (3)
Top-down proteomics (3)
SWATH MS (2)
ILLUMINA, Illumina HiSeq 4000, Illumina HiSeq 2500 (1)
Mass spectrometry assay (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (16)
Liquid Chromatography MS - negative - reverse phase (11)
NextSeq 500 (9)
Illumina HiSeq 2000 (3)
Liquid Chromatography MS - negative - hilic (3)
Direct infusion MS - negative (2)
Direct infusion MS - positive (2)
DNA Microarray Scanner (Model G2505C, Agilent Technologies) (1)
Illumina Genome Analyzer IIx (1)
Illumina HiSeq 4000 (1)
LTQ FT (1)
MaXis (1)
LTQ (1)
Q Exactive HF (1)
Q Exactive HF-X (1)
Direct infusion MS - (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
LTQ Orbitrap XL (Thermo Scientific) (1)
LTQ XL (Thermo Scientific) (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS -neg - hilic (1)
Liquid Chromatography MS – pos - hilic (1)

Publication Date

2010 (23)
2015 (20)
2023 (18)
2016 (17)
2021 (12)
2018 (12)
2014 (12)
2024 (12)
2008 (11)
2022 (10)
2013 (9)
2025 (9)
2020 (8)
2011 (7)
2007 (7)
2012 (5)
2009 (5)
2017 (3)
2005 (2)
2019 (2)
2026 (2)
2006 (1)
2003 (1)

CHEBI ID

CHEBI:16196 (5)
CHEBI:17351 (5)
CHEBI:30769 (5)
CHEBI:16359 (4)
CHEBI:30915 (4)
CHEBI:15603 (3)
CHEBI:15741 (3)
CHEBI:16856 (3)
CHEBI:16865 (3)
CHEBI:16919 (3)
CHEBI:17858 (3)
CHEBI:18012 (3)
CHEBI:18237 (3)
CHEBI:18257 (3)
CHEBI:25017 (3)
CHEBI:28716 (3)
CHEBI:28842 (3)
CHEBI:28865 (3)
CHEBI:29016 (3)
CHEBI:35038 (3)
CHEBI:6650 (3)
CHEBI:72998 (3)
CHEBI:73024 (3)
CHEBI:85700 (3)
CHEBI:136085 (2)
CHEBI:139138 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)
CHEBI:15422 (2)
CHEBI:15428 (2)

Metabolite Name

Cholic acid (4)
9(10)-EpOME (3)
Linoleic acid (3)
PC(16:0/0:0) (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1,20-Eicosanediol (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
2-Hydroxymyristic acid (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
Butyrylcarnitine (2)
Citrate (2)
Dibutyl phthalate (DBP) (2)
Dodecanedioic acid (2)
Elaidic acid (2)
Fumarate (2)
Gamma-aminobutyric acid (2)
L-Leucine (2)
Levulinic acid (2)
Lyso-PC(16:0) (2)
Monoolein (2)
Myristoleic acid (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Oleic acid (2)
PC(18:2/18:2) (2)
Phloretin (2)
Tauroursodeoxycholic acid (2)
Undecylenic acid (2)

First Public Date

2015 (1)

Study type

Transcription profiling by array (80)
RNA-seq of coding RNA (16)
ChIP-seq (7)
Unknown experiment type (3)
Methylation profiling by array (3)
RNA-seq of non coding RNA (2)
ChIP-chip by tiling array (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (441)
2023 (394)
2021 (369)
2025 (335)
2024 (310)
2020 (261)
2019 (244)
2018 (241)
2015 (185)
2017 (184)
2016 (157)
2014 (129)
2013 (106)
2011 (91)
2012 (85)
2010 (69)
2026 (51)
2009 (49)
2008 (39)
2006 (19)
2007 (18)
2005 (12)
2004 (9)
2003 (7)
1998 (5)
2000 (4)
2002 (2)
2001 (2)
1999 (2)

Lab affiliation

University of Warwick (7)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (4)
Department of Chemistry, Imperial College London, Molecular Sciences Research Hub, London, W12 0BZ, UK The Francis Crick Institute, London, NW1 1AT, UK (4)
Foetal Exposure Group School of Clinical Sciences University of Bristol United Kingdom (2)
6Department of Molecular Science/UT Health Rio Grande Valley, USA (1)
Baker Heart and Diabetes Institute, Aus (1)
BioOrganic Mass Spectrometry laboratory (LSMBO) Institut Plurisciplinaire Hubert Curien University of Strasbourg. France (1)
CIR, Queen’s Medical Research Institute, University of Edinburgh (1)
CRUK Beatson Institute (1)
Centre for Inflammation Research, Institute for Regeneration and Repair (1)
Centre for Inflammation Research, Institute for Regeneration and Repair, University of Edinburgh (1)
Centre for Inflammation research, Institute for Regeneration and Repair, University of Edinburgh (1)
Children's Medical Research Institute, Faculty of Medicine and Health, Westmead, NSW, Australia (1)
Department of Biochemistry and Microbiology, L-Probe Lab Ghent University (1)
Department of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, 30 Flemington Road, Parkville, Victoria 3052 Australia (1)
Department of Biochemistry, Monash University, Clayton,3168, Australia (1)
Department of Biology, Maynooth University (1)
Department of Chemistry, Imperial College London, Molecular Research Science Hub, 80 Wood Lane, London W12 0BZ, United Kingdom. The Francis Crick Institute, 1 Midland Road, London NW1 1AT, United Kingdom. (1)
Department of Microbiology and Immunology Lineberger Cancer Center University of North Carolina, Chapel Hill (1)
Department of Molecular and Cellular Biology, University of Guelph, Guelph, ON, Canada, N1G 2W1; bSPARC BioCentre, The Hospital for Sick Children, Toronto, ON, Canada, M5G 0A4. (1)
Department of Proteomics and Signal Transduction. MaxPlanck Institute of Biochemistry (1)
Department of Zoology, School of Natural Sciences, National University of Ireland, Galway. (1)
Dept of Chemistry, University of Illinois at Urbana-Champaign (1)
Dept of Pathology, Dalhousie University (1)
Genome Stability Unit, St. Vincent’s Institute of Medical Research, Fitzroy, Australia (1)
Ghent University, Department of Plant Biotechnology and Bioinformatics, 9052 Ghent, Belgium VIB Center for Plant Systems Biology, 9052 Ghent, Belgium Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Loughborough LE12 5RD, United Kingdom. Centre for Plant Integrative Biology, University of Nottingham, Loughborough LE12 5RD, United Kingdom. (1)
IUSM Center for Proteome Analysis, Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN (1)
James McGill Professor of Neurology and Neurosurgery and Anatomy and Cell Biology Montreal Neurological Institute-Hospital McGill, Montreal CANADA (1)
KU Leuven - University of Leuven, Department of Microbiology and Immunology, Rega Institute for Medical Research, Laboratory of Molecular Bacteriology, B-3000 Leuven, Belgium (1)
Marine Biological Association (1)

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Progression of KRas^G12D;Rosa26-MYC tumours to invasive disease

The aim of the study was to investigate gene expression tumour progression of KRas*/MYC driven lung tumours from adenocarcinoma in situ to invasive disease.

ORGANISM(S): Mus musculus

2018-06-01 | E-MTAB-6432 | biostudies-arrayexpress

Ubiquitin-mediated modulation of necroptotic effector MLKL

We aimed to identify lysine (K) residues that are endogenously ubiquitylated upon TNF-induced necroptosis. To this end, we used a quantitative mass spectrometry-based approach. Briefly, MDFs were treated with TSZ or left untreated and protein lysates were digested with trypsin into peptides. Ubiquit...

ORGANISM(S): Mus musculus (Mouse)

2021-04-13 | PXD018857 | Pride

Oral digoxin effects on exercise performance, K⁺ regulation and skeletal muscle Na⁺ ,K⁺ -ATPase in healthy humans.

Not available

S-EPMC9541254 | biostudies-literature

Expression data from C57BL/6J and MRL/MpJ hearts following acute myocardial infarction

The Murphy Roth Large (MRL) mouse, a strain capable of regenerating right ventricular myocardium, has a high post-myocardial infarction (MI) survival rate compared with C57BL6/J (C57) mice. The biological processes responsible for this survival advantage are unknown. We compared acute post-MI gene e...

ORGANISM(S): Mus musculus

2010-05-27 | E-GEOD-19322 | biostudies-arrayexpress

Comparison of De Novo Transcriptome Assemblers and k-mer Strategies Using the Killifish, Fundulus heteroclitus.

Not available

S-EPMC4824410 | biostudies-literature

Sequence-function analysis of the K+-selective family of ion channels using a comprehensive alignment and the KcsA channel structure.

Not available

S-EPMC1302856 | biostudies-literature

A Practical Guide to Sparse k-Means Clustering for Studying Molecular Development of the Human Brain.

Not available

S-EPMC8636820 | biostudies-literature

Genome Sequences of Cluster K Mycobacteriophages Deby, LaterM, LilPharaoh, Paola, SgtBeansprout, and Sulley.