Myotube - OmicsDI

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Unknown (911)
Genomics (178)
Transcriptomics (157)
Proteomics (79)
Metabolomics (7)
Methylation profiling (4)
Other (2)

Organisms

Mus musculus (120)
Bombyx mori (62)
Schizosaccharomyces pombe (62)
Human immunodeficiency virus 1 (62)
Oryza sativa Indica Group (62)
Sinorhizobium meliloti BL225C (62)
Sus scrofa domesticus (62)
Ostreococcus tauri (62)
Saccharomyces cerevisiae (62)
Synechocystis sp. PCC 6803 (62)
Olavius algarvensis Gamma 1 endosymbiont (62)
Vitis vinifera (62)
Staphylococcus aureus (62)
Rattus norvegicus (62)
Rattus rattus (62)
Olavius algarvensis Delta 4 endosymbiont (62)
Escherichia coli (62)
Candida albicans (62)
Cyanophora paradoxa (62)
Bursaphelenchus xylophilus (62)
Homo sapiens (59)
Rattus norvegicus (6)
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Danio rerio (2)
Oncorhynchus mykiss (2)
Gallus gallus (2)
Sus scrofa (1)
mouse metagenome (1)
Drosophila melanogaster (1)
Capra hircus (1)

Organisms

Mus musculus (80)
Homo sapiens (36)
Rattus norvegicus (5)
Bos taurus (3)
Gallus gallus (2)
Trichinella pseudospiralis (1)
Rattus (1)
Drosophila melanogaster (1)
Oncorhynchus mykiss (1)
mouse metagenome (1)
Sus scrofa (1)

Repository

ENA (153)
geo (106)
biostudies-arrayexpress (78)
pride (62)
iProX (9)
MassIVE (7)
MetaboLights (6)
ExpressionAtlas (2)
EGA (2)
jPOST (1)
MetabolomicsWorkbench (1)

Tissue

Myotube (31)
Cell culture (15)
Skeletal muscle (11)
Permanent cell line cell (6)
Myoblast (4)
C2C12 cell (4)
Muscle (3)
Skeletal muscle fiber (3)
Myoblast cell line (2)
Skeletal muscle myoblast (2)
Leg muscle (2)
Heart (2)
Skeletal muscle cell (2)
Differentiated myotube (1)
Skeletal muscle tissue (1)
Myotubes (1)
Somatic muscle myotube (1)
Skeletal muscle cell line (1)
Proliferating skeletal muscle satellite cell (1)
Myoblast maturation (1)
Fat cell (1)
Neuroblast (1)
Pancreatic islet (1)
Mesenchymal cell (1)
Islet of Langerhans (1)
Diploid cell (1)
Fibroblast (1)
Primary cell (1)

Disease

Type 2 diabetes mellitus (4)
Disease free (3)
Alcoholic liver cirrhosis (2)
Facioscapulohumeral dystrophy (1)
Normal (1)
Prion disease (1)
Liver cirrhosis (1)
Duchenne muscular dystrophy (1)
Liver disease (1)
Cardiovascular system disease (1)
Amyotrophic lateral sclerosis (1)

Technology Type

Mass Spectrometry (63)
Shotgun proteomics (34)
Bottom-up proteomics (19)
Data-dependent acquisition (11)
Affinity purification coupled with mass spectrometry proteomics (5)
NMR spectroscopy (3)
Mass spectrometry (3)
Data-independent acquisition (2)
Gel-based experiment (2)
Mass spectrometry assay (1)
ESI (1)
DiaPASEF (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

NextSeq 2000 (3)
Illumina HiSeq 4000 (3)
Illumina HiSeq 1500 (2)
Illumina HiSeq 2500 (2)
Illumina NovaSeq 6000 (2)
NextSeq 500 (2)
Orbitrap Fusion Lumos (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - positive - hilic (2)
Nanodrop 2000c spectrophotometer (1)
Quiagen Mini prep kit (1)
Illumina NovaSeq X (1)
Ion Torrent Proton (1)
Illumina (1)
NextSeq 550 (1)
TripleTOF 5600 (1)
Orbitrap Fusion (1)
TimsTOF SCP (1)
Q Exactive (1)
Q Exactive Plus (1)
Gas Chromatography MS - positive (1)
Nuclear Magnetic Resonance (NMR) (1)
Bruker (1)
Liquid Chromatography MS - (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2026 (31)
2025 (30)
2020 (24)
2024 (23)
2023 (17)
2013 (16)
2022 (15)
2011 (15)
2021 (13)
2019 (12)
2016 (10)
2014 (10)
2012 (10)
2015 (6)
2018 (6)
2010 (5)
2008 (5)
2007 (5)
2017 (4)
2009 (3)
2004 (2)
2006 (1)
2005 (1)

CHEBI ID

CHEBI:16449 (3)
CHEBI:15366 (3)
CHEBI:78320 (3)
CHEBI:17822 (2)
CHEBI:16709 (2)
CHEBI:26271 (2)
CHEBI:25094 (2)
CHEBI:18237 (2)
CHEBI:22653 (2)
CHEBI:18186 (2)
CHEBI:16811 (2)
CHEBI:28300 (2)
CHEBI:16530 (2)
CHEBI:25017 (2)
CHEBI:15428 (2)
CHEBI:17754 (2)
CHEBI:16958 (2)
CHEBI:15741 (2)
CHEBI:17268 (2)
CHEBI:28044 (2)
CHEBI:17154 (2)
CHEBI:27266 (2)
CHEBI:7916 (2)
CHEBI:35932 (2)
CHEBI:17385 (2)
CHEBI:16919 (2)
CHEBI:27897 (2)
CHEBI:30769 (2)
CHEBI:57865 (1)
CHEBI:58115 (1)

Metabolite Name

Lactic acid (2)
Alanine (2)
Lactate (2)
Succinic acid (2)
3,7-dimethyluric acid (1)
Homovanillic acid (1)
Hydroxyphenyllactic acid (1)
Ribulose 5-phosphate (1)
Unknown_28.08 (1)
Arachidic_acid (1)
D-glucose-indole-3-acetate (1)
M-dioxane (1)
Unknown_16.79 (1)
Unknown_11.06 (1)
Unknown_10.70 (1)
Unknown_9.77 (1)
Unknown_8.67 (1)
Unknown_8.55 (1)
Unknown_8.03 (1)
Ketoisoleucine (1)
Acetic_acid (1)
3-methyl-2-ketobutyric_acid (1)
Unknown_33.02 (1)
1-monolinoelylpalmitin (1)
Unknown_32.01 (1)
Unknown_31.80 (1)
Unknown_30.38 (1)
Beta-gentiobiose (1)
Unknown_disacharride (1)
Unknown_29.48 (1)

First Public Date

2026 (23)
2024 (22)
2014 (21)
2025 (15)
2020 (13)
2023 (11)
2022 (11)
2019 (10)
2021 (8)
2016 (5)
2018 (4)
2017 (4)
2015 (4)
2013 (2)

Classification

helminths (1)

Study type

Transcription profiling by array (46)
RNA-seq of coding RNA (15)
ChIP-seq (10)
Cell line - High-throughput sequencing (2)
Transcription profiling by RT-PCR (1)
MicroRNA profiling by high throughput sequencing (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2025 (103)
2022 (97)
2023 (95)
2024 (89)
2021 (84)
2020 (77)
2019 (53)
2018 (51)
2017 (43)
2016 (42)
2015 (35)
2011 (35)
2013 (34)
2012 (25)
2026 (25)
2014 (23)
2010 (19)
2009 (17)
2008 (9)
2007 (9)
2006 (9)
2003 (4)
2004 (3)
1998 (3)
2005 (2)
2000 (2)
2001 (1)

Lab affiliation

Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, SE-751 23 Uppsala, Sweden. (4)
Institute for Clinical Biochemistry and Pathobiochemistry, German Diabetes Center (DDZ), Leibniz Center for Diabetes Research at Heinrich-Heine-University Düsseldorf, Auf´m Hennekamp 65, 40225 Düsseldorf, Germany (3)
Department of Inflammation and Immunity, Gastroenterology and Hepatology. Cleveland Clinic, Cleveland Ohio, USA (3)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (3)
Head of Proteomics (3)
Department of Inflammation and Immunity, Gastroenterology and Hepatology. Cleveland Clinic, Cleveland Ohio (2)
Institute for Clinical Biochemistry and Pathobiochemistry German Diabetes Center (DDZ) Leibniz Center for Diabetes Research at Heinrich Heine University Düsseldorf Auf´m Hennekamp 65 40225 Düsseldorf Germany (2)
The University of Melbourne (2)
BMB, University of Southern Denmark (1)
IUSM Center for Proteome Analysis, Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN (1)
Department of Fundamental Neurosciences, University of Lausanne, Lausanne, Switzerland (1)
IMP - Research Institute of Molecular Pathology, IMBA - Institute of Molecular Biotechnology (1)
Institute of Life Course & Medical Sciences Faculty of Health and Life Sciences University of Liverpool Liverpool UK (1)
Division of Endocrinology, Diabetes, and Clinical Nutrition, University Hospital Zurich, Switzerland (1)
Penn Epigenetics Institute Department of Biochemistry and Biophysics Smilow Center for Translational Research University of Pennsylvania School of Medicine (1)
Université Paris Cité, CNRS, Epigenetics and Cell Fate, UMR7216, F-75013 Paris, France (1)
Section of Research Resources H093 The Pennsylvania State University College of Medicine 500 University Drive Hershey, PA 17033-0850 USA (1)
IMBA, Institute of Molecular Biotechnology of the Austrian Academy of Sciences, Vienna, Austria; IMP, Institute for Molecular Pathology, Vienna, Austria (1)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and Signalling Research Centres BIOSS and CIBSS, University of Freiburg, 79104 Freiburg im Breisgau, Germany (1)
Nencki Institute of Experimental Biology (1)
Institute of Sports Sciences, Faculty of Biology and Medicine, University of Lausanne (1)
Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copnehagen (1)
University of Copenhagen, Novo Nordisk Foundatio Center for Basic Metabolic Research (1)
Ulster University, Northern Ireland Center for Stratified Medicine (1)
Max-Delbrück Center for Molecular Medicine, Robert-Rössle Str. 10, 13125 Berlin, Germany (1)
General Manager of PROMEC, NTNU, Norway (1)
Department of Gastroenterology, Hepatology & Nutrition, Cleveland Clinic (1)
UniCamillus (1)
Laboratório Especial de Toxinologia Aplicada, Center of Toxins, Immune-Response and Cell Signaling (CeTICS), Instituto Butantan, São Paulo, Brazil. (1)
the University of Sydney (1)

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Mouse skeletal myotube chronic low-frequency stimulation

Not available

ORGANISM(S): Mus musculus

ST000286 | MetabolomicsWorkbench

Transcriptomic response of ginsenoside Rc (gRc) in C2C12 myotube under H2O2-induced oxidative stress

PRJNA816344 | ENA

Myotube/Adipocyte Powder-Enriched Alginate-Zein Hydrogels Support Myotube Alignment for 3D Myoblast Culture.

Not available

S-EPMC12897132 | biostudies-literature

Transcriptomic response of ethanol extract of Jakyakgamcho-tang (JGT-E) in C2C12 myotube

PRJNA1252750 | ENA

FilaminC pull-down experiment from myotube lysates

This project was designed to identify a difference in the binding affinity of FILIP1 to different FLNc variants. To this end FLNc domain 1-3 and FLNc d18-21 were used as bait for a pull-down analysis.

ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human)

2020-05-25 | PXD017670 | Pride

long read RNA-seq from myotube (ENCSR907NKV)

C2C12 myotube For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

ORGANISM(S): Mus musculus

2022-12-04 | GSE219898 | GEO

Aldosterone-induced myotube to fibroblast signals

PRJNA1304882 | ENA

Human myotube transcriptome response to intelectin

PRJNA933599 | ENA

Single-nucleus RNA-seq identifies divergent populations of FSHD2 myotube nuclei [Fluidigm]

PRJNA600756 | ENA

Transcription profiling of zebrafish myotube producing phenotype to the hypertrophic growth phenotype to investigate miRNA-mRNA interactions in zebrafish muscle

Microarray experiments were used to determine the global changes in microRNA and mRNA expression associated with the transition from the myotube producing phenotype (M+, 10-12 mm total length) to the hypertrophic growth phenotype (M-, 28-31 mm total length) in fish reared at 26-27oC over the whole l...

ORGANISM(S): Danio rerio

2009-01-01 | E-TABM-526 | biostudies-arrayexpress

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1338 Results

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