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ProteomicsBoDV-1 phosphoprotein BioID in HEK293
Here we have identified human proteins in spatial proximity (proximal interaction network) of BoDV-1 Phosphoprotein fused to BirA* (E.Coli biotin ligase R118G abortive mutant) at the N-ter and C-ter ends in human cells by proximity-dependent biotinylation (BioID)-based approach. We report 301 high-c...
ORGANISM(S): Homo sapiens (Human) 
2026-01-27 | PXD036750 | Pride
Bioid Bodv-1 Human Phosphoprotein Proximal interactomics 
ProteomicsDesigning workflows for large-scale Omic Based biomarker identification for hepatocellular carcinoma
Ter-polymer (MMA/EGDMA/1,2-Epoxy-5-Hexene) is fabricated via the polymerization using ethylene glycol di-methacrylate (EGDMA) as polar crosslinker. The oxirane groups of ter-polymer are immobilized with cysteic acid to enhance the hydrophilicity of HILIC sorbent. The enrichment efficacy is evaluated...
ORGANISM(S): Homo sapiens (Human) 
2022-10-14 | PXD030890 | Pride
Ter-polymer Cysteic acid Enrichment Mass spectrometry Hilic 
GenomicsJMJD6 and NMYC binding examined by ChIP-seq in NMYC overexpressing CHP134 human neuroblastoma cells
JMJD6 (also known as PTDSR) is an important oncogene that is upregulated in 17q21-ter gained neuroblastoma.It plays a role in E2F and N-Myc-regulated gene pathways and neuroblastoma tumorigenesis Using ChIP-Seq, we profiled JMJD6 and NMYC binding in the NMYC overexpressing neuroblastoma cell line. W...
ORGANISM(S): Homo sapiens 
2019-06-23 | GSE129588 | GEO
GenomicsFunctional analysis of Kap1 genomic recruitment
A current model for the genomic recruitment of Kap1 is via its interaction with KRAB domain-containing zinc finger transcription factors. We have performed ChIP-seq for various mutant KAP1 proteins and shown that this recruitment mechanism mediates binding of KAP1 only to the 3M-CM-"M-BM-^@M-BM-^Y e...
ORGANISM(S): Homo sapiens 
2011-05-24 | E-GEOD-27929 | biostudies-arrayexpress
ProteomicsDeciphering NAC53, NAC78 interactome in response to Pst infection; NAC53, NAC78, MDP25 subcellular interactomes and identifying ubiquitination sites of NAC53 and NAC78 upon HRD1 E3 ligase mediated ubiquitination.
Analysis of NAC53 and NAC78 interactome in normal condition or upon Pseudomonas syringea pv. tomato DC3000 ∆HopQ infection. Constructs promUBQ10::eGFP-NAC53/eGFP-NAC78 are used as baits and promUBQ10::eGFP is used as control. Analysis of ubiquitination sites on NAC53 and NAC78 upon HRD1a/b ubiquitin...
ORGANISM(S): Nicotiana benthamiana 
2026-03-23 | PXD075538 | Pride
Ap-ms Interactome Ubiquitination Subcellular localization Bacterial infection Transcription factors Microtubule depolymerizing factor 
GenomicsHomo sapiens
Identification of genes downregulated due to loss at 8p11.22-ter
PRJNA273355 | ENA
UnknownDiversity of the Tellurite Resistance Gene Operon in Escherichia coli.
Not available
S-EPMC8193136 | biostudies-literature
UnknownPrevalent and distinct spliceosomal 3'-end processing mechanisms for fungal telomerase RNA.
Not available
S-EPMC4299825 | biostudies-literature
UnknownEffect of weight loss, with or without exercise, on body composition and sex hormones in postmenopausal women: the SHAPE-2 trial.
Not available
S-EPMC4557857 | biostudies-literature
UnknownStructural and functional properties of the Kunitz-type and C-terminal domains of Amblyomin-X supporting its antitumor activity.
Not available
S-EPMC9948614 | biostudies-literature
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