Nagy A A - OmicsDI

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Unknown (3142)
Transcriptomics (102)
Proteomics (50)
Models (17)
Genomics (16)
Metabolomics (2)

Organisms

Homo sapiens (67)
Mus musculus (46)
Saccharomyces cerevisiae (12)
Arabidopsis thaliana (6)
Rattus norvegicus (6)
Mammalia (3)
Drosophila melanogaster (3)
Schizosaccharomyces pombe (2)
Thermoplasma acidophilum DSM 1728 (2)
Salmonella enterica (1)
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Triticum aestivum (1)
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178876 (1)
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Exidia glandulosa HHB12029 (1)
Mucidula mucida (1)
Staphylococcus aureus (1)

Organisms

Mus musculus (6)
unidentified (1)
Saccharomyces cerevisiae (1)

Repository

biostudies-arrayexpress (106)
pride (37)
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Tissue

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Disease

Normal (2)
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2-aminoadipic 2-oxoadipic aciduria (1)
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Parkinson's disease (1)
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Technology Type

Mass Spectrometry (37)
Shotgun proteomics (14)
Bottom-up proteomics (10)
Gel-based experiment (9)
Data-dependent acquisition (3)
Mass spectrometry (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
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MSE (1)

Instrument Platform

Illumina HiSeq 2500 (4)
Illumina HiSeq 2000 (3)
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NextSeq 550 (2)
NextSeq 500 (2)
MaXis (2)
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Python (1)
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2013 (11)
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2011 (9)
2009 (9)
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2007 (3)
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UNIPROT ID/AC

P26309 (3)
P06400 (2)
P08153 (2)
P11746 (2)
P11938 (2)
P13365 (2)
P20438 (2)
P24864 (2)
P24869 (2)
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Q00684 (2)
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O00327 (1)
O13286 (1)
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P0CG63 (1)

ENSEMBL ID

ENSMUSG00000021039 (1)
ENSMUSG00000027651 (1)
ENSMUSG00000098557 (1)
ENSMUSP00000069525 (1)
ENSMUSP00000140201 (1)
ENSMUSP00000141097 (1)
ENSMUSP00000141637 (1)

CHEBI ID

CHEBI:33699 (2)
CHEBI:15356 (2)
CHEBI:15428 (2)
CHEBI:15741 (2)
CHEBI:15891 (2)
CHEBI:15978 (2)
CHEBI:16113 (2)
CHEBI:16199 (2)
CHEBI:16449 (2)
CHEBI:16708 (2)
CHEBI:16737 (2)
CHEBI:16811 (2)
CHEBI:16958 (2)
CHEBI:17050 (2)
CHEBI:17148 (2)
CHEBI:17822 (2)
CHEBI:18012 (2)
CHEBI:18133 (2)
CHEBI:18186 (2)
CHEBI:18257 (2)
CHEBI:22660 (2)
CHEBI:24898 (2)
CHEBI:25017 (2)
CHEBI:25094 (2)
CHEBI:26271 (2)
CHEBI:27266 (2)
CHEBI:27897 (2)
CHEBI:28044 (2)
CHEBI:16991 (1)
CHEBI:41879 (1)

Metabolite Name

3-phosphoglycerate (2)
Adenine (2)
Alanine (2)
Beta alanine (2)
Cholesterol (2)
Citric acid (2)
Creatinine (2)
Cysteine (2)
Fumaric acid (2)
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Glycerol-3-phosphate (2)
Glycine (2)
Hexose (2)
Isoleucine (2)
Itaconic acid (2)
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Leucine (2)
Lysine (2)
Malic acid (2)
Methionine (2)
Phenylalanine (2)
Proline (2)
Putrescine (2)
Pyruvic acid (2)
Serine (2)
Succinic acid (2)
Taurine (2)
Tyrosine (2)
Urea (2)
Valine (2)

First Public Date

2025 (4)
2013 (3)
2026 (1)
2023 (1)
2022 (1)
2017 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (12)
Generalized logical model (1)

Lab affiliation

Research Group Mitochondrial Disorders, Institute of Human Genetics, Technische Universität München, München, Germany (5)
Department of Physiology, Faculty of Pharmacy, University of Valencia, Burjassot, Valencia, Spain (2)
Associate Professor of Neurology and Neuroscience (1)
BIOCEV, First Faculty of Medicine, Charles University, 252 50 Vestec, Czech Republic (1)
Barnett Institute of Chemical and Biological Analysis and Department of Chemistry & Chemical Biology, Northeastern University, Boston, MA, USA. (1)
Clinical Proteomics Medizinisches Proteom-Center Ruhr-University Bochum (1)
Core Unit Proteomics, Berlin Institute of Health at Charite - Universitaetsmedizin Berlin and Max-Delbrueck-Center for Molecular Medicine, Berlin, Germany (1)
Core Unit Proteomics, Berlin Institute of Health at Charite-Universitaetsmedizin Berlin and Max-Delbrueck-Center for Molecular Medicine, Berlin, Germany (1)
Department of Basic and Clinical Neuroscience, The Maurice Wohl Clinical Neuroscience Institute, Institute of Psychiatry, Psychology, & Neuroscience, King’s College London, London, UK (1)
Department of Biochemistry and Molecular Biology, University of Debrecen, Hungary (1)
Department of Biochemistry and Molecular and Structural Biology, Jozef Stefen Institute, Jamova cesta 39, 1000, Ljubljana, Slovenia (1)
Department of Biology, University of Copenhagen, 2100 Copenhagen O, Denmark (1)
Department of Environmental Medicine and Molecular Toxicology, Tohoku University Graduate School of Medicine, Sendai 980-8575, Japan. (1)
Department of Genetics, Cell- and Immunobiology, Semmelweis University, Budapest, Hungary MTA-SE Immune-Proteogenomics Extracellular Vesicle Research Group, Budapest, Hungary HCEMM-SE Extracellular Vesicles Research Group, Budapest, Hungary (1)
Department of Integrated Immunobiology Duke School of Medicine Durham, NC, USA (1)
Dept. of Structural Biology (1)
Fungal Molecular Ecology, Biosciences, Swansea University, Swansea, Wales (1)
Harvard Medical School Department of Neurobiology (1)
Interdisciplinary Research Centre HALOmem, Charles Tanford Protein Centre, Institute for Biochemistry and Biotechnology, Martin Luther University Halle-Wittenberg, Halle, Germany (1)
Medizinisches Proteom-Center Ruhr-University Bochum (1)
Michael Barber Centre for Collaborative Mass Spectrometry Manchester Institute of Biotechnology Department of Chemistry The University of Manchester (1)
Newcastle University, Translational and cliniclal research institute, UK (1)
Northeast Ohio Medical University (1)
Professor, Institute of Biomaterials & Biomedical Engineering, University of Toronto Canada Research Chair in Stem Cell Bioengineering Terrence Donnelly Centre for Cellular and Biomolecular Research Chief Scientific Officer, Centre for Commercialization of Regenerative Medicine FRSC (1)
Proteomics Core Facility, University of Gothenburg (1)
Research Group of Mitochondrial Disorders, Institute of Human Genetics, Technische Universität München, München (1)
Research Group of Mitochondrial Disorders, Institute of Human Genetics, Technische Universität München, München, Germany (1)
Rutgers University-Newark, Chemistry Department (1)
School of Natural Sciences, Macquarie University. (1)
Spanish National Cancer Research Centre (CNIO) ProteoRed-ISCIII Melchor Férnandez Almagro, 3 28029 Madrid. SPAIN (1)

IsPrivate

False (15)

Submitter Keywords

Immuno-oncology (1)
TransQST (1)

Modification

Not available (1)

Study type

Transcription profiling by array (61)
RNA-seq of coding RNA (18)
Other (7)
ChIP-seq (3)
ChIP-chip by tiling array (2)
ChIP-chip by array (2)
RNA-seq of coding RNA from single cells (2)
Unknown experiment type (1)
Genotyping by array (1)
MicroRNA profiling by high throughput sequencing (1)
Comparative genomic hybridization by array (1)
MicroRNA profiling by array (1)
DNA-seq (1)
Methylation profiling by array (1)
Genotyping by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2023 (364)
2022 (362)
2021 (359)
2025 (305)
2024 (303)
2020 (250)
2019 (210)
2018 (184)
2017 (133)
2016 (119)
2014 (118)
2015 (100)
2013 (74)
2012 (66)
2026 (55)
2011 (50)
2010 (47)
2009 (37)
2008 (29)
2006 (22)
2007 (14)
2005 (13)
2004 (12)
2002 (10)
2003 (4)
1998 (4)
2001 (3)
1999 (1)

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Proteomics analysis of Thermoplasma acidophilum with molecular sieve chromatography in combination with LC-MS/MS

Not available

ORGANISM(S): Thermoplasma acidophilum DSM 1728

2009-07-28 | PRD000803 | Pride

The NagY regulator: A member of the BglG/SacY antiterminator family conserved in Enterococcus faecalis and involved in virulence.

Not available

S-EPMC9981650 | biostudies-literature

The NagY antiterminator in <i>Enterococcus faecalis:</i> a novel regulatory mechanism and its impact on cell metabolism.

Not available

S-EPMC12502629 | biostudies-literature

Enterococcus faecalis V19 NagY co-immunoprecipitation

PRJNA1279004 | ENA

FAIRE-chip in MCF7 and LNCaP

The compaction degree of chromatin is intimately related to its functionality and active cis-regulatory elements typically exist within open chromatin regions depleted in nucleosomes (Heintzman et al. 2007; Boyle et al. 2008). These domains can be identified using Formaldehyde-Assisted Isolation of ...

ORGANISM(S): Homo sapiens

2010-05-14 | E-GEOD-11579 | biostudies-arrayexpress

Postauthorization safety surveillance study of antihaemophilic factor (recombinant) reconstituted in 2 mL sterile water for injection in children with haemophilia A.

Not available

S-EPMC7383916 | biostudies-literature

Transcriptome analysis of the archaeon Thermoplasma acidophilum cultured under aerobic and anaerobic conditions

Investigation of whole genome gene expression level changes in Thermoplasma acidophilum cultured under aerobic and anaerobic conditions. The analysis are further described in Na Sun, Cuiping Pan, Stephan Nickell, Matthias Mann, Wolfgang Baumeister, and István Nagy, Quantitative proteome and transcri...

ORGANISM(S): Thermoplasma acidophilum DSM 1728

2011-09-26 | E-GEOD-21956 | biostudies-arrayexpress

Global Deterministic and Stochastic Allelic Specific Gene Expression in Single Blastomeres of Mouse Early Embryos

Here we modified a single cell whole transcriptome amplification method to make it capable of amplifying cDNAs as long as 3kb efficiently and unbiasedly. We combined this modified single cell cDNA amplification method with Applied Biosystems next generation sequencing SOLiD™ System to set up a singl...

ORGANISM(S): Mus musculus

2010-12-31 | E-GEOD-22182 | biostudies-arrayexpress

A Phase 1 Open-Label Study to Assess the Tolerability, Safety, and Immunogenicity of Hyaluronidase-Facilitated Subcutaneous Immunoglobulin 20% in Healthy Adults.

Not available

S-EPMC10739571 | biostudies-literature

identification of the NagY regulon of Enterococcus faecalis

PRJNA1221897 | ENA

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