Nano-lc - OmicsDI

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Proteomics (6705)
Unknown (532)
Transcriptomics (41)
Genomics (22)
Metabolomics (18)
Other (7)

Organisms

Homo sapiens (49)
Mus musculus (28)
Arabidopsis thaliana (5)
Rattus norvegicus (4)
Drosophila melanogaster (3)
Human papillomavirus (2)
Escherichia coli (2)
cellular organisms (2)
Asparagus officinalis (1)
Fragaria x ananassa (1)
Aedes aegypti (1)
Sus scrofa (1)
Danio rerio (1)
Methylomirabilis oxygeniifera (SeqCode) (1)
Solanum tuberosum (1)
Aspergillus fumigatus (1)
Aeromonas hydrophila subsp. hydrophila ATCC 7966 (1)
Aspergillus flavus NRRL3357 (1)
Bubalus bubalis (1)
Bufo gargarizans gargarizans (1)
Ctenopharyngodon idella (1)
Naja philippinensis (1)
Popeia (1)
Rattus rattus (1)
Sorghum bicolor x Saccharum hybrid cultivar (1)
Vibrio natriegens (1)
Zea mays (1)
Human immunodeficiency virus 2 (1)
Saccharomyces cerevisiae (1)
Homo (1)

Organisms

Homo sapiens (8)
Mus musculus (3)
Methylomirabilis oxygeniifera (SeqCode) (1)
Xanthomonas campestris (1)
Human adenovirus 7 (1)
Brassica napus (1)
Aspergillus fumigatus (1)
Danio rerio (1)
Solanum tuberosum (1)

Repository

pride (6554)
MassIVE (77)
biostudies-arrayexpress (35)
jPOST (34)
iProX (29)
ENA (22)
MetaboLights (15)
geo (9)
PanoramaPublic (5)
GPMDB (4)
PeptideAtlas (4)
GNPS (3)
NODE (1)
PAXDB (1)

Tissue

Cell culture (1426)
Epithelial cell (449)
Brain (346)
Permanent cell line cell (259)
Liver (212)
Blood plasma (181)
Plant cell (178)
Blood (162)
Leaf (152)
Heart (138)
Fibroblast (135)
Kidney (118)
Lung (112)
Cell suspension culture (107)
Whole body (104)
Blood cell (98)
Blood serum (97)
T cell (93)
Macrophage (82)
B cell (79)
Colon (77)
Skin (75)
Hepatocyte (74)
Embryonic stem cell (67)
Bone marrow (65)
Root (64)
Stem cell (53)
Testis (53)
Plasma Non-glyco (1)
Prefrontal Cortex (1)

Disease

Disease free (160)
Breast cancer (145)
Colon cancer (84)
Acute leukemia (64)
Cardiovascular system disease (45)
Wounds and Injuries (43)
Malignant neoplasm of ovary (39)
Cervix carcinoma (38)
Brain cancer (32)
Prostate adenocarcinoma (32)
Alzheimer's disease (31)
COVID-19 (30)
Parkinson's disease (29)
Glioblastoma (27)
Type 2 diabetes mellitus (25)
Brain glioblastoma multiforme (24)
Lymphoma (24)
Severe acute respiratory syndrome (23)
Amyotrophic lateral sclerosis (22)
Lung cancer (22)
Melanoma (21)
Plasmodium falciparum malaria (21)
Non-small cell lung carcinoma (20)
Not Available (4)
Gastric cancer (2)
Mammary tumor (1)
Gastric MALT lymphoma (1)
None (1)
Normal (1)
Alzheimer's Disease (1)

Technology Type

Mass Spectrometry (6554)
Shotgun proteomics (3728)
Bottom-up proteomics (1036)
Affinity purification coupled with mass spectrometry proteomics (746)
Data-dependent acquisition (656)
Gel-based experiment (476)
Data-independent acquisition (287)
Top-down proteomics (237)
SWATH MS (197)
Chemical cross-linking coupled with mass spectrometry proteomics (142)
SRM/MRM (72)
All-ion fragmentation (50)
MSE (28)
Affinity proteomics (23)
DiaPASEF (22)
HDMSE (20)
Mass spectrometry (13)
Mass spectrometry imaging (12)
Metaproteomics (9)
Immunopeptidomics (8)
Proteogenomics (8)
Gel-free quantification method (4)
Glycoproteomics (4)
Mass spectrometry assay (2)
Gel-based quantification method (1)
RNA mass spectrometry (1)

Instrument Platform

Q Exactive (9)
LTQ Orbitrap Elite (7)
LTQ (7)
Orbitrap Fusion Lumos (6)
Q Exactive HF (6)
Orbitrap Eclipse (5)
Orbitrap Fusion (5)
LTQ Orbitrap Velos (5)
Instrument (4)
LTQ Orbitrap (4)
Q Exactive HF-X (3)
Easy n-LC and LTQ Orbitrap XL mass spectrometers (both from Thermo Fisher, San Jose, CA, USA) (2)
Impact (2)
LTQ Orbitrap XL ETD (2)
LTQ XL (2)
MaXis II (2)
Orbitrap Exploris 480 (2)
Q Exactive Plus (2)
QExactive (2)
Nano-electrospray source, were used for nano LC-MS/MS (1)
1200 series LC/MSD SL (1)
4000 QTRAP (1)
6520A Quadrupole Time-of-Flight LC/MS (1)
Bruker Impact II (1)
Easy n-LC and LTQ Orbitrap XL mass spectrometers (both from Thermo Fisher, San Jose, CA, USA), each equipped with a nano-electrospray source, were used for nano LC-MS/MS. (1)
LTQ Orbitrap Velos Pro (1)
LTQ Orbitrap XL (1)
LTQ XL ETD (1)
MS:1000031 (1)
Orbitrap Astral (1)

Publication Date

2025 (953)
2023 (843)
2022 (827)
2024 (816)
2021 (708)
2020 (518)
2026 (506)
2019 (456)
2018 (348)
2017 (265)
2016 (235)
2015 (125)
2014 (88)
2013 (23)
2010 (9)
2009 (9)
2008 (6)
2012 (4)
2011 (4)
2007 (2)
2006 (1)
2005 (1)

UNIPROT ID/AC

1433B_HUMAN (1)
1433E_HUMAN (1)
1433F_HUMAN (1)
1433G_HUMAN (1)
1433S_HUMAN (1)
1433T_HUMAN (1)
1433Z_HUMAN (1)
2A5D_HUMAN (1)
2A5E_HUMAN (1)
2A5G_HUMAN (1)
2AAA_HUMAN (1)
2AAB_HUMAN (1)
2ABA_HUMAN (1)
2ABB_HUMAN (1)
2ABD_HUMAN (1)
3HIDH_HUMAN (1)
4F2_HUMAN (1)
5NTC_HUMAN (1)
6PGD_HUMAN (1)
6PGL_HUMAN (1)
8ODP_HUMAN (1)
9606.ENSP00000233596 (1)
9606.ENSP00000268624 (1)
9606.ENSP00000291295 (1)
9606.ENSP00000299157 (1)
9606.ENSP00000330842 (1)
9606.ENSP00000331127 (1)
9606.ENSP00000343200 (1)
9606.ENSP00000347168 (1)
9606.ENSP00000348924 (1)

ENSEMBL ID

ENSMUSP00000141097 (2)
ENSG00000170477 (1)
ENSMUSG00000072849 (1)
ENSMUSG00000098557 (1)

CHEBI ID

CHEBI:16335 (6)
CHEBI:16750 (4)
CHEBI:21891 (4)
CHEBI:16704 (4)
CHEBI:178090 (3)
CHEBI:20129 (3)
CHEBI:19229 (3)
CHEBI:19228 (3)
CHEBI:20794 (3)
CHEBI:19227 (3)
CHEBI:19062 (3)
CHEBI:69426 (3)
CHEBI:20607 (3)
CHEBI:17802 (3)
CHEBI:17562 (3)
CHEBI:19065 (3)
CHEBI:16020 (3)
CHEBI:17596 (3)
CHEBI:87239 (2)
CHEBI:167041 (2)
CHEBI:85682 (2)
CHEBI:134236 (2)
CHEBI:140361 (2)
CHEBI:140360 (2)
CHEBI:134459 (2)
CHEBI:134237 (2)
CHEBI:134435 (2)
CHEBI:141289 (2)
CHEBI:138335 (2)
CHEBI:85707 (2)

Metabolite Name

Adenosine (5)
2'-O-methyluridine (3)
7-methylguanosine (3)
3-methylcytidine (3)
5-methylcytidine (3)
2'-O-methylguanosine (3)
2'-O-methylcytidine (3)
1-methylinosine (3)
1-methyladenosine (3)
2'-O-methyladenosine (3)
1-methylguanosine (3)
4-methylcytidine (2)
2-methylguanosine (2)
2'-O-methylinosine (2)
6-methyladenosine (2)
8-methyladenosine (2)
2-methyladenosine (2)
3-methyluridine (2)
5-methyluridine (2)
3-methylpseudouridine (2)
1-methylpseudouridine (2)
Guanosine (2)
N6-methyladenosine (2)
Cytidine (2)
Guanosine (2)
Uridine (2)
Pseudouridine (2)
Inosine (2)
DAG 44:1 (1)
DAG 42:2 (1)

First Public Date

2024 (5)
2022 (4)
2025 (3)
2023 (3)
2020 (2)
2013 (2)
2021 (1)
2016 (1)
2014 (1)

Classification

fungi (1)
viruses (1)

Modification

15.994915 (24)
57.021464 (20)
4-tetrahydrothiazine-3-carboxylic acid (18)
4x(15)N labeled L-arginine (18)
2x(15)N labeled L-lysine (16)
42.010565 (11)
-17.026549 (10)
Not available (8)
+3amu) (6)
-18.010565 (5)
79.966331 (5)
4 (4)
0.984016 (3)
71.037114 (3)
N6-dimethyl-L-lysine (3)
0.984 (2)
15.99491 (2)
4x(2)H labeled dimethylated residue (2)
56.026215 (2)
57.02146 (2)
58.005479 (2)
N6 (2)
15.9949 (1)
32.056407 (1)
3x(2)H labeled N6-acetyl-L-lysine (1)
4'-dihydroxyphenylalanine (1)
4-dinitrophenyl modified residue (1)
43.00581 (1)
45.029395 (1)
4x(2)H labeled dimethylated L-lysine (1)

Study type

Transcription profiling by array (14)
MicroRNA profiling by array (13)
RNA-seq of non coding RNA (3)
Genotyping by array (2)
RNA-seq of coding RNA (2)
Other (1)

Release Date

2021 (54)
2020 (53)
2019 (43)
2025 (41)
2022 (41)
2014 (38)
2023 (35)
2016 (32)
2018 (31)
2024 (30)
2015 (27)
2017 (26)
2009 (22)
2010 (21)
2012 (20)
2011 (16)
2013 (14)
2008 (9)
2007 (6)
2026 (4)
2006 (1)
2005 (1)
2004 (1)
2000 (1)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (77)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (29)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (17)
Head of Proteomics (16)
Ludwig-Maximilians-Universität München Genzentrum Laboratory for Functional Genome Analysis Feodor-Lynen-Str. 25 D-81377 München (14)
University of Bristol (14)
Centre for Genomic Regulation (13)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (12)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (12)
TIGEM (12)
Head of the Curie Institute Mass Spectrometry Platform (11)
Department of Biotechnology, Delft University of Technology, The Netherlands. (10)
Max-Planck-Institute for Biology of Ageing Department of Mitochondrial Proteostasis Joseph-Stelzmann-Str. 9b 50931 Cologne (10)
NCI/NIH CSB (10)
Biomolecular characterization unit, Center for Sustainable Resource Science, RIKEN (9)
Centre for Proteome Research, University of Liverpool, Liverpool, UK (9)
Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences (9)
Department of Ecology & Evolutionary Biology, University of California, Los Angeles, CA (8)
Head of Laboratory of Neuro-Oncology, Neurology, Clinical & Cancer Proteomics (8)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (8)
University of Edinburgh (8)
University of Warwick (8)
Center for Reproductive Evolution, Biology Department, Syracuse University (7)
Department of Biotechnology, TU Delft, The Netherlands (7)
Dept. Oncology Pathology, Karolinska Institutet, and Scilifelab, Stockholm, Sweden (7)
Evolutionary and translational venomics Lab, Instituto de Biomedicina de Valencia, CSIC (7)
Max Planck Institute for Terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany (7)
Assistant Professor, Evolutionary Venomics Lab, Center for Ecological Sciences, Indian Institute of Science, Bangalore, India (6)
Biozentrum, University of Basel, Switzerland (6)
Department of Biochemistry, Biomedical Sciences Building, University of Bristol, Bristol, United Kingdom (6)

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Performance comparisons of nano-LC systems, electrospray sources and LC-MS-MS platforms.

Not available

S-EPMC3886563 | biostudies-literature

Optimization of label-free nano LC-MS/MS analysis of the placental proteome

We optimized a protocol to analyze the placental proteome by means of label-free nano-LC-MS/MS mass spectrometry with regard to sample treatment, protein extraction, and protein digestion, in order to obtain a high protein concentration for identification of a specific protein signature according to...

ORGANISM(S): Homo sapiens (Human)

2020-10-13 | PXD020438 | Pride

Placenta Lc-msms

Highly automated nano-LC/MS-based approach for thousand cell-scale quantification of side chain-hydroxylated oxysterols.

Not available

S-EPMC4076067 | biostudies-literature

Comparision of Nano and Micro-flow LC-MS/MS Based Single Shot Proteomics

In this study, we systematically optimized the micro-flow LC-MS/MS system based ssDDA proteomics. Our results show that combination of 2 – 3 h gradient with prosit rescore method identified the highest number of proteins and peptides. There is no benefit to increase column length. A single 3 h run i...

ORGANISM(S): Homo sapiens (Human)

2021-07-01 | PXD024169 | Pride

Single shot proteomics Nano-flow lc Micro-flow lc

Characterization of ACE inhibitory peptides from Mactra veneriformis hydrolysate by nano-liquid chromatography electrospray ionization mass spectrometry (Nano-LC-ESI-MS) and molecular docking.

Not available

S-EPMC4113806 | biostudies-literature

An Immuno-Separated Assay for Ochratoxin Detection Coupled with a Nano-Affinity Cleaning-Up for LC-Confirmation.

Not available

S-EPMC9026555 | biostudies-literature

Ultra-Sensitive Bioanalytical Separations Using a New 4-Tritylphenyl Methacrylate-Based Monolithic Nano-Column with an Inner Diameter of 20 µm for Nano-LC.

Not available

S-EPMC12785336 | biostudies-literature