Neisseria - OmicsDI

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Unknown (3416)
Genomics (1583)
Transcriptomics (672)
Proteomics (74)
Other (13)
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Genomic (1)
Methylation profiling (1)

Organisms

Drosophila melanogaster (592)
Homo sapiens (81)
Neisseria meningitidis (71)
Neisseria gonorrhoeae (54)
Mus musculus (47)
Saccharomyces cerevisiae (11)
Arabidopsis thaliana (10)
Neisseria meningitidis MC58 (6)
Escherichia coli (6)
Streptomyces coelicolor (5)
Neisseria gonorrhoeae F62 (5)
Streptococcus pneumoniae (5)
Medicago truncatula (4)
Danio rerio (4)
Solanum lycopersicum (3)
Escherichia coli str. K-12 substr. MG1655 (3)
Neisseria gonorrhoeae FA19 (2)
Neisseria lactamica 020-06 (2)
Helicobacter pylori P12 (2)
Listeria monocytogenes 08-5923 (1)
Methanococcus maripaludis (1)
Vitis sp. cv. 'Norton' (1)
Caenorhabditis briggsae (1)
Helianthus annuus (1)
Haemophilus influenzae R2866 (1)
Acanthamoeba polyphaga mimivirus (1)
Anguilla anguilla (1)
Bombyx mori (1)
Dictyostelium discoideum (1)
Neisseria cinerea (1)

Organisms

Neisseria gonorrhoeae (190)
Neisseria meningitidis (183)
Homo sapiens (21)
Mus musculus (14)
Neisseria subflava (8)
Neisseria (8)
Neisseria meningitidis 8013 (7)
Neisseria weixii (7)
Neisseria sp. (7)
Neisseria gonorrhoeae F62 (5)
Neisseria mucosa (5)
Neisseria animalis (5)
Neisseria perflava (4)
Neisseria musculi (4)
Neisseria chenwenguii (4)
Neisseria gonorrhoeae FA 1090 (4)
Neisseria elongata (4)
Neisseria meningitidis MC58 (3)
Neisseria gonorrhoeae NCCP11945 (3)
Neisseria elongata subsp. glycolytica ATCC 29315 (3)
Neisseria sicca (3)
Neisseria gonorrhoeae 1291 (3)
Neisseria cinerea (3)
human oral metagenome (3)
Bacteria (3)
human gut metagenome (3)
Neisseria gonorrhoeae FA19 (2)
Neisseria gonorrhoeae MS11 (2)
Neisseria meningitidis H44/76 (2)
Neisseria yangbaofengii (2)

Repository

ENA (1361)
biostudies-arrayexpress (801)
geo (114)
pride (46)
EGA (10)
MassIVE (6)
MetaboLights (6)
iProX (4)
BioModels (2)
ExpressionAtlas (1)
dbGaP (1)
GNPS (1)

Tissue

Cell culture (7)
Epithelial cell (4)
Prokaryotic cell (3)
Cell suspension culture (2)
Bacterial protein (1)
Blood (1)
Cell lysate (1)
Microvascular endothelial cell (1)
Saliva (1)
Skin (1)
Vaginal epithelium (1)
Vesicle (1)
Vesicle membrane (1)

Disease

Normal (6)
Gonorrhea (5)
Meningococcal meningitis (2)
HIV-1 and Neisseria gonorrhoeae infected (1)
Uncomplicated gonorrhoea (1)
Follicular lymphoma (1)
Bacterial meningitis (1)
Bacterial vaginosis (1)
Meningitis (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (46)
Shotgun proteomics (25)
Bottom-up proteomics (10)
Mass spectrometry (6)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Gel-based experiment (3)
Data-independent acquisition (2)
MSE (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
DiaPASEF (1)
Metaproteomics (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

ScanArray Express HT (10)
NextSeq 500 (5)
Illumina HiSeq 2500 (3)
Jencons Millennium CO2 Incubator (2)
ScanArray Express HT [PerkinElmer] (2)
Illumina HiSeq 2000 (2)
TripleTOF 5600 (2)
Direct infusion MS - negative (2)
Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice/ Thermo Fisher Scientific (1)
Macrogen (1)
Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice (1)
Desktop (1)
Bacteriological Laboratory (1)
Quantseq FWD kit (Lexogen, Austria) was used to prepare libraries for NGS. Reverse transcription of RNA, amplification of libraries, quality control of libraries and purification were performed exactly as described in manual provided with kit. (1)
RNAeasy kit (1)
Cell culture lab (1)
GeneQuant (1)
Axon- GenePix4000B (1)
Ion Torrent Proton (1)
NextSeq 550 (1)
Illumina NovaSeq 6000 (1)
Q Exactive (1)
LTQ Orbitrap (1)
Orbitrap Ascend (1)
Orbitrap Fusion (1)
Thermo-Fisher Q-Orbitrap MS/MS (1)
Xevo G2-XS QTOF (Waters) (1)
Quattro Premier XE (Waters) (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2013 (384)
2011 (220)
2010 (85)
2012 (31)
2015 (25)
2008 (24)
2016 (23)
2014 (20)
2024 (19)
2025 (18)
2018 (17)
2026 (15)
2009 (15)
2020 (13)
2023 (12)
2017 (11)
2007 (11)
2022 (10)
2021 (10)
2019 (7)
2005 (7)
2006 (3)

CHEBI ID

CHEBI:33282 (1)
CHEBI:136491 (1)
CHEBI:136490 (1)
CHEBI:136487 (1)
CHEBI:136473 (1)
CHEBI:136467 (1)
CHEBI:136465 (1)
CHEBI:136464 (1)
CHEBI:136463 (1)
CHEBI:136462 (1)
CHEBI:140653 (1)
CHEBI:136460 (1)
CHEBI:136495 (1)
CHEBI:136459 (1)
CHEBI:136458 (1)
CHEBI:136457 (1)
CHEBI:136455 (1)
CHEBI:136454 (1)
CHEBI:136452 (1)
CHEBI:136451 (1)
CHEBI:6080 (1)
CHEBI:136449 (1)
CHEBI:136430 (1)
CHEBI:136427 (1)
CHEBI:136405 (1)
CHEBI:136404 (1)
CHEBI:136429 (1)
CHEBI:136403 (1)
CHEBI:4701 (1)
CHEBI:140355 (1)

Metabolite Name

Allantoin (2)
Urea (2)
Creatine (2)
Floridanine (1)
Florosenine (1)
Desacetyldoronine (1)
Onetine (1)
Otosenine (1)
Senkirkine (1)
Acetylerucifoline N-oxide (1)
Acetylerucifoline (1)
Erucifoline N-oxide (1)
Erucifoline (1)
18-hydroxyjacobine (1)
Dehydrojaconine (1)
Dehydrojacoline (1)
Jacozine N-oxide (1)
Jacozine (1)
Jaconine N-oxide (1)
Jaconine (1)
Jacoline N-oxide (1)
Jacoline (1)
Jacobine N-oxide (1)
Jacobine (1)
Acetylseneciphylline N-oxide (1)
Acetylseneciphylline (1)
Spartioidine N-oxide (1)
Spartioidine (1)
Seneciphylline N-oxide (1)
Seneciphylline (1)

First Public Date

2013 (334)
2025 (109)
2024 (108)
2015 (104)
2022 (86)
2020 (84)
2023 (82)
2021 (78)
2014 (78)
2018 (66)
2019 (65)
2017 (56)
2026 (55)
2016 (46)
2012 (4)
2010 (4)
2011 (2)

Modelling Approach

Computational model (1)
Constraint-based model (1)

Lab affiliation

Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (3)
Department of Biochemistry & Molecular Biology, Monash Biomedicine Discovery Institute, Monash University, Clayton 3800, Australia (2)
Department of Pharmaceutical Sciences, College of Pharmacy, Oregon State University, Corvallis, Oregon 97331, USA (2)
School of Biosciences University of Sheffield Sheffield, S10 2TN United Kingdom (2)
AG Schoen Institute for Hygiene and Microbiology Würzburg, Germany (1)
Associate Professor | Department of Pharmaceutical Sciences | College of Pharmacy | Oregon State University (1)
Chemical Proteomics, Division of Chemistry I, Department of Medical Biochemistry and Biophysiscs (MBB), Karolinska Institutet, Biomedicum, Solna, Sweden (1)
Chemical Proteomics, Division of Chemistry I, MBB Dept., Biomedicum, Karolinska Insitute, Stockholm, Sweden (1)
Clinical Proteomics Facility Medical Biochemistry Academic Medical Center, University of Amsterdam (1)
Department of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, 7 UK. (1)
Department of Biosciences, Center for Integrative Microbial Evolution, University of Oslo, Oslo, Norway, Centre for Ecological and Evolutionary Synthesis, University of Oslo, Oslo, Norway (1)
Department of Microbial Proteomics and Mass Spectrometry, Ernst-Moritz-Arndt-University Greifswald, Germany (1)
Department of Microbiology, Institute of Clinical medicine, University of Oslo, Norway. (1)
Department of Pharmacy, University of Copenhagen (1)
Division of Medical Virology, Department of Pathology (1)
GlaxoSmithKline, Siena, Italy (1)
Griffith University (1)
INSTITUT COCHIN Inserm U1016, CNRS UMR 8104, Université Paris Dsecartes, Sorbonne Paris Cité, France (1)
Institut Pasteur, Université Paris Cité, INSERM U1225, Pathogenesis of Vascular Infections unit, F-75015 Paris, France (1)
Institut Pasteur, Université Paris-Cité, CNRS, UAR 2024, Mass Spectrometry for Biology, 75015 PARIS (1)
Institut für Mikrobiologie Dept. Mikrobielle Proteomik Universität Greifswald Felix-Hausdorff-Str. 8 17489 Greifswald (1)
Institute for Microbiology Department of Microbial Proteomics and Mass Spectrometry Ernst-Moritz-Arndt-University Greifswald F.-L.-Jahn-Str. 15 17489 Greifswald (1)
Institute for Research in Immunology and Cancer of the Université de Montréal (1)
Klinik für Kinder- und Jugendmedizin, Medizinische Fakultät Mannheim, Germany (1)
Lab. Functional Proteomics, Dept Life Sciences, University of Siena, Italy (1)
Laboratory for Applied Science and Technology in Health, Carlos Chagas Institute, Fiocruz Parana, Parana, Brazil (1)
Mass Spectrometry for Biology Unit Department of Structural Biology and Chemistry Institut Pasteur, CNRS USR 2000 28 rue du Docteur Roux, 75015 Paris, France (1)
Medical Microbiology and Immunology, University of Wisconsin-Madison (1)
National Institute for Biological Standards and Control (1)
Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen, Copenhagen, Denmark (1)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

Submitter Keywords

Ersilia (1)
Machine Learning Model (1)

Classification

bacteria (682)

Modification

15.994915 (1)
4 (1)
42.010565 (1)
71.037114 (1)
Not available (1)

Study type

ChIP-chip by tiling array (393)
ChIP-seq (202)
Transcription profiling by array (134)
RNA-seq of coding RNA (26)
Comparative genomic hybridization by array (16)
Unknown experiment type (8)
RNA-seq of non coding RNA (5)
ChIP-chip by array (4)
Transcription profiling by tiling array (2)
Transcription profiling by RT-PCR (2)
RIP-seq (2)
Other (2)
Methylation profiling by array (2)
DNA-seq (1)
Proteomic profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2013 (481)
2022 (298)
2011 (295)
2023 (278)
2021 (269)
2025 (267)
2020 (247)
2019 (247)
2024 (235)
2018 (209)
2014 (159)
2016 (155)
2015 (150)
2010 (145)
2017 (140)
2012 (106)
2009 (74)
2007 (64)
2008 (61)
2006 (47)
2005 (43)
2026 (42)
2003 (33)
2001 (33)
2002 (29)
2004 (28)
1998 (27)
2000 (25)
1999 (23)
1997 (2)

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Comparative genomic hybridization of one Neisseria cinerea, two Neisseria lactamica, two Neisseria gonorrhoeae, and 48 Neisseria meningitidis isolates

Microarray comparative genome hybridization (mCGH) data was collected from one Neisseria cinerea, two Neisseria lactamica, two Neisseria gonorrhoeae, and 48 Neisseria meningitidis isolates. For N. meningitidis, these isolates are from diverse clonal complexes, invasive and carriage strains, and all ...

ORGANISM(S): Neisseria cinerea

2007-04-04 | E-TIGR-129 | biostudies-arrayexpress

Control of RNA stability by NrrF, an iron-regulated small RNA in Neisseria gonorrhoeae.

Regulation of gene expression by small non-coding RNAs (sRNAs) plays a critical role in bacterial response to physiological stresses. NrrF, a trans-acting sRNA in Neisseria meningitidis and Neisseria gonorrhoeae, has been shown in the meningococcus to indirectly control, in response to iron (Fe) av...

ORGANISM(S): Neisseria gonorrhoeae

2013-09-27 | E-GEOD-48526 | biostudies-arrayexpress

Transcriptome analysis of Neisseria meningitidis strain MC58 in GC medium

Transcriptome analysis of Neisseria meningitidis strain MC58 during a time course growth in GC medium

ORGANISM(S): Neisseria meningitidis

2011-06-09 | E-TABM-1113 | biostudies-arrayexpress

Transcriptome analysis of Neisseria meningitidis strain MC58 in human whole blood

Transcriptome analysis of Neisseria meningitidis strain MC58 during a time course growth in human whole blood

ORGANISM(S): Neisseria meningitidis

2011-06-09 | E-TABM-1115 | biostudies-arrayexpress

MpeR regulation in Neisseria gonorrhoeae (F19) through an iron-responsive mechanism

Previous studies have shown that the MpeR transcriptional regulator produced by Neisseria gonorrhoeae represses expression of mtrF, which encodes a putative inner membrane protein that works with the MtrC-MtrD-MtrE efflux pump to allow gonococci to resist high levels of multiple hydrophobic antimicr...

ORGANISM(S): Neisseria gonorrhoeae

2012-04-03 | E-GEOD-32717 | biostudies-arrayexpress

Neisseria gonorrhoeae FA1090 transcriptional response to iron availability

4 pan-Neisseria arrays examining the gonococcal response to iron availability. Dual channel (Cy3/Cy5) arrays, using random nonamers for cDNA generation. Arrays scanned with ScanArray ExpressHT microarray scanner. Data analyzed using ArrayVision 7.0 and compiled in GeneSpring.

ORGANISM(S): Neisseria gonorrhoeae

2010-06-09 | E-GEOD-2147 | biostudies-arrayexpress

Comparative genomic hybridization of variably invasive strains of Neisseria meningitidis

Genomic comparison of more and less invasive strains of Neisseria meningitidis

ORGANISM(S): Neisseria meningitidis

2005-05-30 | E-MEXP-343 | biostudies-arrayexpress

Comparative genomic hybridization to study capsule switching between serogroup C and W of Neisseria meningitidis strains

Changing antigenic structure such as capsule polysaccharide is a common strategy for bacterial pathogen to evade host immune system. In this regard, the recent emergence of an invasive W:2a:P1.7-2,4 ST-11 strain in New Zealand, which is an uncommon pathogenic serogroup, was investigated for its gen...

ORGANISM(S): Neisseria meningitidis

2009-06-03 | E-MEXP-1910 | biostudies-arrayexpress

Expression of phosphofructokinase in Neisseria meningitidis

Neisseria meningitidis serogroup B is a pathogen that can infect diverse sites within the human host. According to the N. meningitidis genomic information and experimental observations glucose can be completely catabolized through the Entner-Doudoroff pathway and the pentose phosphate pathway. The E...

ORGANISM(S): Neisseria meningitidis

2010-06-20 | E-GEOD-18951 | biostudies-arrayexpress

Transcription profiling by array of Transcriptional profiling of serogroup B Neisseria meningitidis growing in human blood: an approach to vaccine antigen discovery.

Neisseria meningitidis is a nasopharyngeal commensal of humans which occasionally invades the blood to cause septicaemia. The transcriptome of N. meningitidis strain MC58 grown in human blood for up to 4 hours was determined and around 10% of the genome was found to be differentially regulated. The ...

ORGANISM(S): Neisseria meningitidis

2012-11-06 | E-BUGS-121 | biostudies-arrayexpress

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