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ProteomicsProteogenomic analysis of Mycobacterium smegmatis using high resolution mass spectrometry
Biochemical evidence is vital for accurate genome annotation. The integration of experimental data collected at the proteome level using high resolution mass spectrometry allows for improvements in genome annotation by providing evidence for novel gene models, while validating or modifying others. ...
ORGANISM(S): Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) 
2016-03-31 | PXD003500 | Pride
Mass spectrometry Genome annotation Mycobacterium smegmatis Proteogenomics Proteomics 
ProteomicsProteomic Time-Course Investigation into the Effects of Exposure of Mycobacterium smegmatis to Sub-Lethal Dose of Rifampicin
Drug susceptible Mycobacterium smegmatis (Mc2-155) was exposed to a sub-MIC concentration of antimycobacterial drug Rifampicin (treated) or DMSO (control). Cells were harvested at 30, 255 and 300 minutes post-exposure and the proteome at each time analysed using LC-MS/MS on a Thermo Q-Exactive.
ORGANISM(S): Mycobacterium Smegmatis Str. Mc2 155 (ncbitaxon:246196) 
2019-03-18 | MSV000083589 | MassIVE
ProteomicsReanalysis of Data-dependent acquisition based proteomic datasets of Mycobacterium smegmatis
Detection of species-specific proteotypic peptides for accurate and easy characterization of infectious non-tuberculous mycobacteria such as Mycobacterium smegmatis is essential. Therefore, we carried out reanalysis of publicly available M. smegmatis proteomic dataset PXD003303, PXD004197, PXD010020...
ORGANISM(S): Mycobacterium smegmatis 
2024-03-07 | PXD046063 | Pride
M. smegmatis Proteomics Non-tuberculous mycobacteria Lc-ms/ms 
ProteomicsComparison between the proteome of Escherichia coli single colony and during liquid culture
Most of the proteomic studies done so far uses bacterial cells harvested from liquid culture media. However it is widely accepted that many important determinants associated with virulence and host cell adhesion are exclusively expressed during growth on solid media. As an attempt to complement prev...
ORGANISM(S): Escherichia coli 
2021-09-09 | PXD019140 | Pride
Protein extraction Bacterial proteome Ecoli Mass spectrometry Single-colony Proteomics 
UnknownAmbient particulate pollutants in the ultrafine range promote early atherosclerosis and systemic oxidative stress.
Not available
S-EPMC3014059 | biostudies-literature
ProteomicsMsmegmatis strMC2 155 - Whole organism, iBAQ (Potgieteretal,frontmicrobiol2016)
abundance based on iBAQ, Interaction consistency score: 11.4, Coverage: 45
ORGANISM(S): 246196 
2016-00-00 | 1196164352 | PAXDB
ProteomicsMsmegmatis strMC2 155 - Whole organism, iBAQ (Potgieteretal,frontmicrobiol2016)
abundance based on iBAQ, Interaction consistency score: 12.3, Coverage: 45
ORGANISM(S): 246196 
2016-00-00 | 2359555123 | PAXDB
UnknownSediment-Water Interfaces as Traps and Sources of Microplastic Fragments and MicrofibersInsights from Stream Flume Experiments.
Not available
S-EPMC12624745 | biostudies-literature
UnknownRepurposed Antiviral Drugs for Covid-19 - Interim WHO Solidarity Trial Results.
Not available
S-EPMC7727327 | biostudies-literature
UnknownA checklist for assessing the methodological quality of concurrent tES-fMRI studies (ContES checklist): a consensus study and statement.
Not available
S-EPMC7612687 | biostudies-literature
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