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ProteomicsComparison between the proteome of Escherichia coli single colony and during liquid culture
Most of the proteomic studies done so far uses bacterial cells harvested from liquid culture media. However it is widely accepted that many important determinants associated with virulence and host cell adhesion are exclusively expressed during growth on solid media. As an attempt to complement prev...
ORGANISM(S): Escherichia coli 
2021-09-09 | PXD019140 | Pride
Protein extraction Bacterial proteome Ecoli Mass spectrometry Single-colony Proteomics 
GenomicsGeobacillus stearothermophilus strain:single colony | isolate:single colony
Geobacillus stearothermophilus strain:single colony | isolate:single colony Genome sequencing
PRJNA1369172 | ENA
ProteomicsMass spectrometry-based analysis of Mycobacterial single-colony proteome
Here as an attempt to explore bacterial single-colony proteomics, we describe a quantitative mass spectrometry-based protocol to isolate and analyse the proteome of a single mycobacterial colony from 7H10 media. Tryptic peptides are evaluated with high performance liquid chromatography coupled with ...
ORGANISM(S): Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) 
2021-03-11 | PXD018168 | Pride
Protein extraction Mycobacteria Bacterial proteome Mass spectrometry Single-colony Proteomics 
ProteomicsTrichodesmium single colony metaproteomes field station Tricolim_19
Metaproteomes of individual Trichodesmium colonies collected from a single location in the Carribbean sea (65.22W, 17.02N) at 17:00 local time. Some colonies were associated with auto-fluorescent mineral particles. Their proteomes were analyzed individually to investigate the effect of the minerals ...
ORGANISM(S): Trichodesmium 
2021-07-05 | PXD016330 | Pride
Microbe Metaproteomes Trichodesmium Cyanobacterium Ocean Single colony 
GenomicsSingle colony sequencing
Single colony sequencing
PRJEB17864 | ENA
GenomicsSingle-cell transcriptomic profiling of Botrylloides diegensis of a whole colony
Single-cell transcriptomic profiling of Botrylloides diegensis of a whole colony
PRJNA1230065 | ENA
GenomicsSingle-cell RNA sequencing of C3(1)-Tag cancer cells during invasion and colony formation.
Single-cell RNA sequencing of C3(1)-Tag cancer cells during invasion and colony formation.
PRJNA627920 | ENA
GenomicsMycobacterium sp. ATCC 35855 isolate:single colony
Mycobacterium sp. ATCC 35855 isolate:single colony Genome sequencing
PRJNA1039961 | ENA
TranscriptomicsSingle-cell transcriptomic profiling of Botrylloides diegensis of a whole colony
In this study, we performed single-cell RNA sequencing (scRNA-seq) of an entire B. diegensis colony, including zooids, buds, and vascular tunics, to resolve cellular heterogeneity and identify cell and tissue markers.
ORGANISM(S): Botrylloides diegensis 
2025-05-29 | GSE290754 | GEO
GenomicsLactiplantibacillus plantarum WCFS1
Single colony isolate from a human isolate
PRJNA356 | ENA
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