Neofunctionalization

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Mycobacterium tuberculosis SP7 (12)
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Organisms

Solenopsis invicta (3)
Arabidopsis thaliana (3)
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Homo sapiens (2)
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Tissue

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Mass Spectrometry (12)
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CHEBI ID

CHEBI:16551 (2)
CHEBI:4167 (2)
CHEBI:16084 (2)
CHEBI:28602 (2)
CHEBI:16027 (2)
CHEBI:17754 (2)
CHEBI:16236 (2)
CHEBI:30031 (2)
CHEBI:28087 (2)
CHEBI:16908 (2)
CHEBI:15846 (2)
CHEBI:15343 (2)
CHEBI:17835 (2)
CHEBI:17794 (2)
CHEBI:16001 (2)
CHEBI:29052 (2)
CHEBI:17665 (2)
CHEBI:28013 (2)
CHEBI:16108 (2)
CHEBI:16526 (2)
CHEBI:15361 (2)
CHEBI:18021 (2)
CHEBI:16761 (2)
CHEBI:15422 (2)

Metabolite Name

Avideoxycholate; Avideoxycholic acid; 3alpha,16alpha-Dihydroxy-5beta-cholan-24-oic acid; (1)
3beta,12alpha-Dihydroxy-5beta-cholanoate; 3beta,12alpha-Dihydroxy-5beta-cholanoic acid; (1)
Allodeoxycholate; 5alpha-Deoxycholic acid; 3alpha,12alpha-Dihydroxy-5alpha-cholanoic acid; (1)
Allochenodeoxycholate; Allochenodeoxycholic acid; 3alpha,7alpha-Dihydroxy-5alpha-cholanoic acid; (1)
Isoursodeoxycholate; Isoursodeoxycholic acid; 3beta,7beta-Dihydroxy-5beta-cholanoic acid; 3beta,7beta-Dihydroxy-5beta-cholan-24-oic acid; (1)
Isochenodeoxycholate; Isochenodeoxycholic acid; 3beta,7alpha-Dihydroxy-5beta-cholanic acid; (1)
12-Epideoxycholic acid; 12-Epideoxycholate; (1)
Hyodeoxycholate; Hyodesoxycholic acid; 6alpha-Hydroxylithocholate; Iodeoxycholic acid; 3alpha,6alpha-Dihydroxy-5beta-cholanic acid; (1)
Murideoxycholic acid; Murideoxycholate; 6beta-Hydroxylithocholate; 3alpha,6beta-Dihydroxy-5beta-cholanic acid; (1)
Ursodiol; Ursodeoxycholic acid; Ursodeoxycholate; 3alpha,7beta-Dihydroxy-5beta-cholan-24-oic acid; (1)
Deoxycholic acid; Deoxycholate; 3alpha,12alpha-Dihydroxy-5beta-cholanate; 3alpha,12alpha-Dihydroxy-5beta-cholanic acid; (1)
Chenodeoxycholate; Chenodeoxycholic acid; 3alpha,7alpha-Dihydroxy-5beta-cholanic acid; Chenodiol; (1)
Melampodinin; (1)
Nandrolone phenpropionate; Nandrolone phenylpropionate; (1)
4-Chloroprogesterone; 4-Chloropregn-4-ene-3,20-dione; (1)
Trichomycin B; (1)
Lasonolide A; (1)
Monensin; Monensin A; (1)
Eriocitrin; Eriodictyol 7-O-rutinoside; (1)
Vecuronium; (1)
Deoxyloganic acid tetraacetate; (1)
Licoricidin; (1)
Cyflumetofen; (1)
Roseoflavin; 8-Demethyl-8-(dimethylamino)riboflavin; (1)
Kurarinone; (1)
Heliosupine; 7-Angelyl-9-echimidinylheliotridine; (1)
Corynantheine; (1)
Hirsuteine; (1)
Estradiol valerate; (1)
Haloperidol; (1)

IsPrivate

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First Public Date

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Classification

bacteria (2)
fungi (1)

Modelling Approach

Ordinary differential equation model (4)

Study type

Transcription profiling by array (4)
RNA-seq of coding RNA (4)
Comparative genomic hybridization by array (1)

Release Date

2023 (41)
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2024 (29)
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2016 (27)
2018 (25)
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2004 (1)
2003 (1)

Lab affiliation

Institute of Ecology and Evolution, University of Bern, Baltzerstrasse 6, CH-3012 Bern, Switzerland (2)
B CUBE - Center for Molecular Bioengineering, Technische Universität Dresden, Tatzberg 41, 01307 Dresden, Germany (1)
Centre for Advanced Imaging, the University of Queensland (1)
Purdue University (1)
1Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN, USA. 2Center for Plant Biology, Purdue University, West Lafayette, IN, USA. 3Department of Biological Sciences, Purdue University, West Lafayette, IN, USA. (1)
1 Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN 2 Center for Plant Biology, Purdue University, West Lafayette, IN 3 Department of Biological Sciences, Purdue University, West Lafayette, IN (1)
Department of Pharmaceutical Sciences, School of Pharmacy and Pharmaceutical Sciences, University at Buffalo (1)
1. Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN, USA. 2. Center for Plant Biology, Purdue University, West Lafayette, IN, USA. 3. Department of Biological Sciences, Purdue University, West Lafayette, IN, USA. (1)
Université de Strasbourg, CNRS, Architecture et Réactivité de l’ARN, UPR9002, F-67000 Strasbourg, France (1)
School of BioSciences and Bio21 Institute, Faculty of Science, The University of Melbourne, VIC, 3010, Australia. (1)
AG Joachim Kopka Max-Planck-Institut für Molekulare Pflanzenphysiologie Wissenschaftspark Golm Am Mühlenberg 1 14476 Potsdam, Germany (1)

Tags

pathogen (3)
pathogen:bacterium (2)
pathogen:fungus (1)

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Stepwise Neofunctionalization of c-Rel during Vertebrate Evolution (ChIP-Seq)

PRJNA1015721 | ENA

Stepwise Neofunctionalization of c-Rel during Vertebrate Evolution (RNA-Seq)

PRJNA1015722 | ENA

Neofunctionalization of young duplicate genes in Drosophila.

Not available

S-EPMC3808614 | biostudies-literature

Stepwise Neofunctionalization of c-Rel during Vertebrate Evolution

PRJNA1015719 | ENA

Comparative analysis indicates regulatory neofunctionalization of yeast duplicates.

Not available

S-EPMC1895995 | biostudies-literature

Neofunctionalization of duplicated genes under the pressure of gene conversion.

Not available

S-EPMC2278071 | biostudies-literature

Neofunctionalization of a duplicate hatching enzyme gene during the evolution of teleost fishes.

Not available

S-EPMC4219043 | biostudies-literature

Cotton fiber cytosolic proteins by CF-MS

This includes raw files for cotton fiber proteome and table S1 for Variation in protein oligomerization drives neofunctionalization during evolution

ORGANISM(S): Gossypium hirsutum

2021-06-17 | PXD021451 | Pride

Stepwise Neofunctionalization of c-Rel during Vertebrate Evolution (ChIP-Seq)

Adaptive immunity and the five vertebrate NF-kB/Rel family members first appeared in cartilaginous fish, suggesting that NF-kB family expansion allowed the acquisition of new functions to regulate adaptive immune responses. Transcriptome profiling revealed that, even in macrophages, the NF-kB family...

ORGANISM(S): Mus musculus

2023-11-29 | GSE243010 | GEO

Stepwise Neofunctionalization of c-Rel during Vertebrate Evolution (RNA-Seq)

ORGANISM(S): Mus musculus

2024-03-11 | GSE243011 | GEO

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