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ProteomicsHuman thyroid cell line complex CF-DIA-MS
This project aims to explore the protein interaction network of thyroid cancer cell lines through a robotics platform combined with proteomic techniques. The primary method involves using CF-DIA-MS (Co-fractionation Data-Independent Acquisition Mass Spectrometry) to acquire data from three different...
ORGANISM(S): Homo sapiens (Human) 
2025-12-20 | PXD059608 | Pride
Human Thyroid Cell line Cf-dia-ms 
UnknownPROMISed: A novel web-based tool to facilitate analysis and visualization of the molecular interaction networks from co-fractionation mass spectrometry (CF-MS) experiments.
Not available
S-EPMC8453180 | biostudies-literature
UnknownDiscrimination between Asian populations of the parasitoid wasp Ganaspis cf. brasiliensis using a simple MALDI-TOF MS-based method for use with insects.
Not available
S-EPMC7206448 | biostudies-literature
ProteomicsChlamydomonas reinhardtii cc125 co-fractionation mass spectrometry (CF-MS) data
Whole protein suspensions of Chlamydomonas reinhardtii were fractionated using two size exclusion chromatography columns and an ion exchange chromatography column, and the protein-protein interaction network of Chlamydomonas reinhardtii was analysed using co-fractionation mass spectrometry (CF-MS).
ORGANISM(S): Chlamydomonas Reinhardtii 
2024-12-15 | PXD058884 |
ProteomicsCotton fiber cytosolic proteins by CF-MS
This includes raw files for cotton fiber proteome and table S1 for Variation in protein oligomerization drives neofunctionalization during evolution
ORGANISM(S): Gossypium hirsutum 
2021-06-17 | PXD021451 | Pride
Cytosolic proteins Fiber Cf-ms Cotton 
ProteomicsCF-MS experiment in honey bee midgut
his experiment is for 10 replicates of honey bee midgut tissue analyzed through a protein correlation profiling pipeling. Briefly, tissues were gently lysed, enriched for protein complexes and fractionated using size exclusion chromtography
ORGANISM(S): Apis mellifera (Honeybee) 
2023-12-11 | PXD042820 | Pride
Cf-ms Proteomics Apis mellifera Ppi 
ProteomicsDefining the cardiac fibroblast secretome in the post-MI heart in vivo
Cardiac fibrosis is a common feature of ischemic heart disease and cardiac fibroblasts (CF) are key players in cardiac remodeling of the injured heart after myocardial infarction (MI). Fibrosis increases myocardial stiffness, thereby impairing cardiac function, which ultimately progresses to end-sta...
ORGANISM(S): Mus musculus (Mouse) 
2025-03-25 | PXD053791 | Pride
Intercellular crosstalk Proteomics Turboid Myocardial infarction In vivo secretome 
ProteomicsSystematic reanalysis of co-fractionation mass spectrometry data
A total of 206 co-fractionation mass spectrometry (CF-MS) experiments were downloaded from public proteomics repositories such as PRIDE and MASSIVE, then re-analyzed with MaxQuant.
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) Zea mays (Maize) Homo sapiens (Human) Mus musculus (Mouse) Trypanosoma brucei Triticum aestivum (Wheat) Saccharomyces cerevisiae (Baker's yeast) Oryza sativa (Rice) Drosophila melanogaster (Fruit fly) Caenorhabditis elegans Dictyostelium discoideum (Slime mold) Xenopus laevis (African clawed frog) 
2021-04-20 | PXD022048 | Pride
Cf-ms 
ProteomicsAn integrated multi-omic workflow reveals markers of host-microbe dynamics in clinical cystic fibrosis samples
Airway microbiota composition correlates with cystic fibrosis (CF) progression, however, microbial drivers of disease remain unclear. MS-based metaproteomics of bronchoalveolar lavage fluid (BALF) offers insights into both host and microbe dynamics and potential interactions. However, detection of...
ORGANISM(S): Homo sapiens (Human) 
2024-06-25 | PXD041457 | Pride
Human Faims Cystic fibrosis Bronchoalveolar lavage Bal Cf Prm Immune Microbe Mass spectrometry Lung Infection 
ProteomicsAnalytical guidelines for co-fractionation mass spectrometry obtained through global profiling of gold standard Saccharomyces cerevisiae protein complexes
Co-fractionation mass spectrometry (CF-MS) is a technique with potential to characterise endogenous and unmanipulated protein complexes on an unprecedented scale. However this potential has been offset by a lack of guidelines for best-practice CF-MS data collection and analysis. To obtain such guide...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2020-08-24 | PXD019513 | Pride
Protein correlation profiling Co-fractionation mass spectrometry Protein complexes Reference complex profiling Protein-protein interactions 
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