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ProteomicsINKA, an integrative analysis pipeline for inference of hyperactive phosphokinases in mass spectrometry-based phosphoproteomics data: CRC Organoids
CRC Organoid and corresponding PDX data are part of a larger project that includes proteomeXchange accessions PXD006616, PXD008032, and PXD009995. We present a computational pipeline called Integrative Inferred Kinase Activity (INKA) scoring that integrates the observed abundance of phosphopeptides ...
ORGANISM(S): Homo sapiens (Human) 
2019-04-18 | PXD012565 | Pride
Human Single-shot Organoids Phosphokinase ranking Crc Label-free Pdx Phosphoproteomics 
UnknownOsteoBLAST: Computational Routine of Global Molecular Analysis Applied to Biomaterials Development.
Not available
S-EPMC7578266 | biostudies-literature
UnknownQuantitative phosphoproteomics analysis reveals a key role of insulin growth factor 1 receptor (IGF1R) tyrosine kinase in human sperm capacitation.
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S-EPMC4390255 | biostudies-literature
UnknownKSP: an integrated method for predicting catalyzing kinases of phosphorylation sites in proteins.
Not available
S-EPMC7646512 | biostudies-literature
UnknownPredicting kinase activity in angiotensin receptor phosphoproteomes based on sequence-motifs and interactions.
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S-EPMC3983226 | biostudies-literature
UnknownComprehensive evaluation of phosphoproteomic-based kinase activity inference.
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S-EPMC12098709 | biostudies-literature
UnknownUnravelling the GSK3β-related genotypic interaction network influencing hippocampal volume in recurrent major depressive disorder.
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S-EPMC6531290 | biostudies-literature
UnknownSELPHI: correlation-based identification of kinase-associated networks from global phospho-proteomics data sets.
Not available
S-EPMC4489257 | biostudies-literature
UnknownLarge-scale phosphotyrosine proteomic profiling of rat renal collecting duct epithelium reveals predominance of proteins involved in cell polarity determination.
Not available
S-EPMC3328908 | biostudies-literature
ProteomicsInward outward signaling in ovarian cancer: morpho-proteomics/phosphoproteomics profiling upon hypoxia and shear stress characterizes the adaptive potential of OVCAR-3 and SKOV-3 cells
With the onset of resistance, ovarian cancer cells display almost unpredictable adaptive potential. This may derive from genetic ancestry of the tumor cells and can be additionally tailored by post translational protein modifications (PTMs). The latter are profoundly shaped by the physical and chemi...
ORGANISM(S): Homo sapiens (Human) 
2022-01-13 | PXD027466 | Pride
Hypoxia Vasculogenic mimicry Fluid shear stress Morpho-metabolic adaptation Ovarian cancer 
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