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TranscriptomicsSERPINA6, BEX1, AGTR1, SLC26A3, and LAPTM4B are markers of resistance to neoadjuvant chemotherapy in HER2-negative breast cancer
Abstract Introduction Response rates to chemotherapy remain highly variable in breast cancer patients. We set out to identify genes associated with chemotherapy resistance. We analyzed what is currently the largest single-institute set of gene expression profiles derived from breast cancers prior t...
ORGANISM(S): Homo sapiens 
2012-12-01 | E-GEOD-34138 | biostudies-arrayexpress
TranscriptomicsAnkylosing spondylitis vs control synovial biopsies
We have compared synovial biopsies from ankylosing spondylitis and undifferentiated spondylitis patients with healthy controls and osteoarthritis patients Objective: In spondylarthropies, whole-genome gene expression profiling studies have been limited to peripheral blood to date. By undertaking a...
ORGANISM(S): Homo sapiens 
2012-12-01 | E-GEOD-41038 | biostudies-arrayexpress
MetabolomicsIntegrated multi-omics analysis of adverse cardiac remodeling and metabolic inflexibility upon ErbB2 and ERRα deficiency
Functional oncogenic links between ErbB2 and ERRα in HER2+ breast cancer patients support a therapeutic benefit of co-targeted therapies. However, ErbB2 and ERRα also play key roles in heart physiology, and this approach could pose a potential liability to cardiovascular health. Herein, using integr...
2022-09-20 | MTBLS795 | MetaboLights
TranscriptomicsWhole Genome Sequencing Informs Therapeutic Selection for Pancreatic Cancer
Pancreatic cancer remains one of the most lethal of malignancies and a major health burden. We performed whole genome sequencing and CNV analysis of 100 pancreatic ductal adenocarcinomas. Chromosomal rearrangements leading to gene disruption were frequent, affecting genes known to be important in pa...
ORGANISM(S): Homo sapiens 
2015-02-27 | E-GEOD-61502 | biostudies-arrayexpress
TranscriptomicsIntegrative analysis reveals relationships of genetic and epigenetic alterations in osteosarcoma [DNA copy number]
Osteosarcomas are the most common primary malignant tumours of bone, and almost all conventional osteosarcomas are high-grade tumours showing complex genomic aberrations. We have integrated genome-wide genetic and epigenetic profiles from the EuroBoNeT panel of 19 human osteosarcoma cell lines based...
ORGANISM(S): Homo sapiens 
2012-12-06 | E-GEOD-36003 | biostudies-arrayexpress
TranscriptomicsGene expression of canine mammary cancer stem-like cells co-cultured with tumor associated macrophages
The aim of our study was to evaluate gene expression of canine mammary cancer stem-like cells co-cultured with tumor associated macrophages. Two canine mammary cancer cell lines (CMT-U27 and P114) were stained using anti-Sca1 (stem cell antigen 1), anti-EpCAM (Epithelial cell adhesion molecule) an...
ORGANISM(S): Canis lupus familiaris 
2016-06-01 | E-GEOD-73230 | biostudies-arrayexpress
TranscriptomicsIntegrative analysis reveals relationships of genetic and epigenetic alterations in osteosarcoma [gene expression]
Osteosarcomas are the most common primary malignant tumours of bone, and almost all conventional osteosarcomas are high-grade tumours showing complex genomic aberrations. We have integrated genome-wide genetic and epigenetic profiles from the EuroBoNeT panel of 19 human osteosarcoma cell lines based...
ORGANISM(S): Homo sapiens 
2012-12-06 | E-GEOD-36001 | biostudies-arrayexpress
GenomicsDNA methyltransferases are required to induce heterochromatic re-replication in Arabidopsis.
The relationship between epigenetic marks on chromatin and the regulation of DNA replication is poorly understood. Mutation of the H3K27 methyltransferase genes, ARABIDOPSIS TRITHORAX-RELATED PROTEIN5 (ATXR5) and ATXR6, result in re-replication (repeated origin firing within the same cell cycle). He...
ORGANISM(S): Arabidopsis thaliana 
2012-08-07 | E-GEOD-38286 | biostudies-arrayexpress
ProteomicsSera Protein Signatures of Endometrial Cancer Lymph Node Metastases
sera collected from endometrial cancer patients submitted to direct MS/MS analysis in diluted unprocessed form. MS only analysis of sera has also been performed. files are also available.
ORGANISM(S): Homo Sapiens (human) 
2022-03-17 | PXD031892 | JPOST Repository
Proteomics5593 ABL HER2 RNA Binding Protein Gel Bands
For gel band analysis, SDS-PAGE gel bands were subjected to reduction, alkylation, and in-gel tryptic digestion as described here: https://genome.duke.edu/sites/genome.duke.edu/files/In-gelDigestionProtocolrevised_0.pdf. Digested peptides were lyophilized to dryness and resuspended in 12 uL of 0.2% ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2021-06-21 | MSV000087674 | MassIVE
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