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UnknownThe neXtProt knowledgebase in 2020: data, tools and usability improvements.
Not available
S-EPMC7145669 | biostudies-literature
ProteomicsnextPP for chromosome-based proteomic research using neXtProt and GENCODE databases
In this study, we introduce a streamlined pipeline using customized and concatenated GENCODE and neXtProt databases with controlled false discovery rate (FDR) for finding GENCODE ASVs and missing proteins while mapping onto single amino acid variants (SAAVs) from Hippocampal dataset.
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-07-25 | MSV000081385 | MassIVE
UnknownBlinded Testing of Function Annotation for uPE1 Proteins by I-TASSER/COFACTOR Pipeline Using the 2018-2019 Additions to neXtProt and the CAFA3 Challenge.
Not available
S-EPMC6900986 | biostudies-literature
UnknownneXtA5: accelerating annotation of articles via automated approaches in neXtProt.
Not available
S-EPMC4930835 | biostudies-literature
ProteomicsHuman Testis LC-MS/MS - Multi-Protease Strategy Identifies Three PE2 Missing Proteins in Human Testis Tissue
Missing proteins(MPs) investigation is one of the critical missions of Chromosome-based Human Proteome Project(C-HPP). Through analyzing sequence of MPs from neXtProt database, we found that there are no detectable tryptic peptides for some MPs. Here, we attmept a multi-enzymes strategy to cover thi...
ORGANISM(S): Homo sapiens (Human) 
2017-10-09 | PXD006465 | Pride
Testis Multi-enzymes Lc-ms/ms 
UnknownAccelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt.
Not available
S-EPMC6301339 | biostudies-literature
UnknownResearch on the Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, According to the HUPO Human Proteome Project.
Not available
S-EPMC7718309 | biostudies-literature
UnknownProgress on Identifying and Characterizing the Human Proteome: 2019 Metrics from the HUPO Human Proteome Project.
Not available
S-EPMC6898754 | biostudies-literature
UnknownThe 2024 Report on the Human Proteome from the HUPO Human Proteome Project.
Not available
S-EPMC11781352 | biostudies-literature
ProteomicsHuman Testis LC-MS/MS
Missing proteins(MPs) investigation is one of the critical missions of Chromosome-based Human Proteome Project(C-HPP). Through analyzing sequence of MPs from neXtProt database, we found that there are no detectable tryptic peptides for some MPs. Here, we attmept a multi-enzymes strategy to cover thi...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2019-06-17 | MSV000083982 | MassIVE
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