Ng Peter P - OmicsDI

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Transcriptomics (350)
Unknown (220)
Genomics (68)
Proteomics (51)
Metabolomics (14)
Models (2)
Genomic (1)

Organisms

Homo sapiens (253)
Mus musculus (115)
Rattus norvegicus (15)
Drosophila melanogaster (12)
Saccharomyces cerevisiae (9)
Bos taurus (7)
Gallus gallus (4)
Arabidopsis thaliana (4)
Euglena gracilis (3)
Zea mays (3)
Cavia porcellus (2)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Dinoroseobacter shibae (1)
Moraxella catarrhalis BBH18 (1)
Papio (1)
Psychrobacter arcticus 273-4 (1)
Pectobacterium carotovorum (1)
Nitrosomonas europaea (1)
Sarcophaga crassipalpis (1)
Actinosynnema pretiosum (1)
Staphylococcus aureus subsp. aureus Mu50 (1)
Pan troglodytes (1)
Tetranychus urticae (1)
Medicago truncatula (1)
Schizosaccharomyces pombe (1)
Oryza sativa (1)
Emiliania huxleyi (1)
Bacillus subtilis (1)
Solanum lycopersicum (1)

Repository

biostudies-arrayexpress (366)
EGA (55)
pride (48)
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Tissue

Cell culture (7)
Embryo (5)
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T cell (1)

Disease

Normal (2)
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Mature T-cell and NK-cell lymphoma (1)
Not applicable (1)
Cryptozoospermia (1)
Breast adenocarcinoma (1)
Temporal lobe epilepsy (1)
Chronic myeloid leukemia (1)
Megakaryoblastic leukemia (1)
Prostate cancer (1)
Brain ischemia (1)
Breast cancer (1)
Disease free (1)
Myotonic dystrophy type 1 (1)
Visceral leishmaniasis (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (48)
Shotgun proteomics (20)
Bottom-up proteomics (13)
Mass spectrometry (10)
Data-dependent acquisition (9)
Gel-based experiment (6)
Affinity purification coupled with mass spectrometry proteomics (5)
SRM/MRM (5)
Data-independent acquisition (4)
SWATH MS (4)
Mass spectrometry assay (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Affymetrix 6.0 (1)
Illumina HumanHap 550K, Illumina HumanHap300-Duo (1)
NMR spectroscopy (1)
Affinity proteomics (1)
RNA mass spectrometry (1)

Instrument Platform

Illumina NovaSeq 6000 (9)
NextSeq 500 (4)
API 4000 QTRAP (AB Sciex) (4)
G2565AA DNA microarray scanner [Agilent] (3)
Illumina HiSeq 4000 (3)
Liquid Chromatography MS - negative - reverse phase (3)
Illumina BeadArray reader (2)
GenePix 4000A [Axon Instruments] (2)
Illumina HiSeq 2000 (2)
Liquid Chromatography MS - positive - reverse phase (2)
Qubit 4.0 Fluorometer/ Agilen 5300 Fragment Analyzer (1)
Axon-GenePix 4100A (1)
FS450 (1)
GCS3000 (1)
ScanArray [PerkinElmer] (1)
Illumina Genome Analyzer II (1)
Scanning hardware (1)
Illumina NovaSeq X (1)
NA (1)
KAPA mRNA HyperPrep Kit (Roche), SS NGS fragment kit (1-6,000 bp; Agilent) (1)
RNAdvance Cell v2, Biomek i7 Hybrid robotic workstation (both BeckmanCoulter) (1)
N/a (1)
NextSeq 2000 (1)
6530A Q-TOF LC/MS (1)
Q Exactive (1)
Flow injection analysis MS - negative (1)
Gas Chromatography MS - positive - medium polarity - Agilent 6890 GC - LECO Pegasus III TOF MS (LECO) (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2013 (59)
2014 (52)
2015 (45)
2010 (35)
2012 (30)
2011 (30)
2016 (25)
2008 (22)
2009 (19)
2024 (16)
2020 (13)
2021 (12)
2026 (11)
2025 (11)
2007 (10)
2022 (9)
2006 (8)
2019 (6)
2005 (5)
2023 (4)
2018 (4)
2017 (4)
2004 (2)
2003 (1)

UNIPROT ID/AC

O60674 (2)
P20963 (2)
P24394 (2)
P29350 (2)
P29597 (2)
P35225 (2)
P42229 (2)
P51692 (2)
P78552 (2)
O14543 (1)
Q14627 (1)
1433B_HUMAN (1)
1433E_HUMAN (1)
1433F_HUMAN (1)
1433G_HUMAN (1)
1433S_HUMAN (1)
1433T_HUMAN (1)
1433Z_HUMAN (1)
2A5D_HUMAN (1)
2A5E_HUMAN (1)
2A5G_HUMAN (1)
2AAA_HUMAN (1)
2AAB_HUMAN (1)
2ABA_HUMAN (1)
2ABB_HUMAN (1)
2ABD_HUMAN (1)
3HIDH_HUMAN (1)
4F2_HUMAN (1)
5NTC_HUMAN (1)
6PGD_HUMAN (1)

CHEBI ID

CHEBI:15544 (4)
CHEBI:15547 (4)
CHEBI:15550 (4)
CHEBI:15551 (4)
CHEBI:15553 (4)
CHEBI:15555 (4)
CHEBI:15647 (4)
CHEBI:15650 (4)
CHEBI:15843 (4)
CHEBI:19138 (4)
CHEBI:27820 (4)
CHEBI:28158 (4)
CHEBI:28852 (4)
CHEBI:34450 (4)
CHEBI:34494 (4)
CHEBI:34784 (4)
CHEBI:38299 (4)
CHEBI:60943 (4)
CHEBI:63966 (4)
CHEBI:63969 (4)
CHEBI:64017 (4)
CHEBI:68947|CHEBI:72815 (4)
CHEBI:72595 (4)
CHEBI:72603 (4)
CHEBI:72605 (4)
CHEBI:72606 (4)
CHEBI:72608 (4)
CHEBI:72610 (4)
CHEBI:72613 (4)
CHEBI:33699 (2)

Metabolite Name

10-HDoHE (4)
11,12-DiHETrE (4)
11-HETE (4)
12,13-DiHOME (4)
12,13-EpOME (4)
12-HEPE (4)
12-HETE (4)
13,14dh,15k-PGD2 (4)
13,14dh,15k-PGE2 (4)
13-HDoHE (4)
13-HODE (4)
13-HOTrE (4)
13-oxoODE (4)
14,15-DiHETrE (4)
14-HDoHE (4)
15-HEPE (4)
15-HETE (4)
15-HETrE (4)
15k-PGE2 (4)
16-HDoHE (4)
17-HDoHE (4)
19(20)-DiHDPA (4)
19(20)-EpDPE (4)
20-HDoHE (4)
4-HDoHE (4)
5,6-EET (4)
5-HETE (4)
6,15dk,13,14dh-PGF1a (4)
6k-PGF1a (4)
7-HDoHE (4)

IsPrivate

False (2)

Modelling Approach

Ordinary differential equation model (2)

Study type

Transcription profiling by array (271)
RNA-seq of coding RNA (19)
Comparative genomic hybridization by array (15)
ChIP-chip by array (12)
ChIP-seq (12)
ChIP-chip by tiling array (7)
Other (7)
Methylation profiling by array (7)
Unknown experiment type (2)
RNA-seq of non coding RNA (2)
Transcription profiling by SAGE (1)
RNA-seq of non coding RNA from single cells (1)
High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by RT-PCR (1)
CUT&RUN (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2013 (60)
2014 (59)
2015 (50)
2021 (48)
2010 (37)
2012 (33)
2011 (32)
2023 (30)
2016 (30)
2024 (26)
2025 (24)
2022 (24)
2008 (22)
2020 (21)
2009 (19)
2018 (18)
2019 (14)
2007 (10)
2026 (7)
2017 (7)
2006 (7)
2005 (5)
2004 (2)
2003 (1)

Lab affiliation

Department of Glycobiology, Institute of Chemistry, Slovak Academy of Sciences (5)
Department of Analytical Biochemistry, Groningen Research Institute of Pharmacy, University of Groningen, Antonius Deusinglaan 1, 9713 AV Groningen, The Netherlands (2)
Laboratory of Immunity & Cell Communication, BIOCEV, First Faculty of Medicine, Charles University, Vestec, Czech Republic (2)
Massachusetts Institute of Technology (2)
1Department of Chemistry & Biochemistry, University of Maryland, College Park, MD 20742 (1)
Centre for Craniofacial and Regenerative Biology, King's College London, Guy's Hospital, United Kingdom (1)
Children’s Hospital of Philadelphia 3615 Civic Center Blvd. Philadelphia, PA 19104 (1)
Clinical and Health Sciences, Mass Spectrometry and Proteomics facility, University of South Australia, Adelaide, Australia (1)
Deparment of Molecular Biology and Genetics Aarhus University, Denmark (1)
Department of Biology, University of Konstanz, Germany (1)
Department of Chemistry & Biochemistry, University of Maryland at College Park (1)
Department of Chemistry & Biochemistry, University of Maryland, College Park, MD 20742, USA (1)
Department of Chemistry and Biochemistry, University of Maryland, College Park (1)
Department of Computational and RNA Biology, Copenhagen University, Denmark (1)
Department of Glycobiology, Institute of Chemistry, Slovak Academy of Sciences, Bratislava, Slovakia (1)
Department of Immunotechnology (Hus 406), Medicon Village, Lund University, 223 81, Lund, Sweden (1)
Department of Immunotechnology, Hus 406, Medicon Village, Lund University, 223 81, Lund, Sweden (1)
Department of Medical BioSciences, Radboud University Medical Center, Nijmegen, The Netherlands. (1)
Department of Mitochondrial Biology, Max Planck Institute for Biology of Ageing, Cologne, D-50931, Germany Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, SE-17177, Sweden Max Planck Institute for Biology of Ageing - Karolinska Institutet Laboratory, Karolinska Institutet, 171 77 Stockholm, Sweden (1)
Department of Molecular Biology and Genetics, Aarhus University, Denmark (1)
Department of Molecular Integrative Physiology University of Illinois at Urbana/Champaign Urbana, IL 61801 (1)
Head Proteomics Group , Leiden University Medical Center, Center for Proteomics and Metabolomics, PO Box 9600, Postal zone P1-Q, 2300 RC Leiden, The Netherlands (1)
Head of the Crick Mass Spectrometry Proteomics Platform (1)
Immunotechnology, LTH, Lund University (1)
Institute for Clinical Chemistry and Pathobiochemistry, Department for Diagnostic Laboratory Medicine, University Hospital Tübingen, Tübingen, Germany (1)
Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Aberystwyth SY23 3DA, United Kingdom (1)
Institute of Chemistry, Slovak Academy of Sciences (1)
Lab of Aquaculture & Artemia Reference Center, Department of Animal Sciences and Aquatic Ecology, Faculty of Bioscience Engineering, Ghent University, 9000 Ghent, Belgium (1)
Laboratory of Immunity & Cell Communication, Division BIOCEV, First Faculty of Medicine, Charles University, Vestec, Czech Republic (1)
Max Planck Institute for Biochemistry (1)

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Transcription profiling of mouse primary capillary PlGF-/- endothelial cells treated with 100 ng/ml PlGF for 6 hours

PlGF expression profile in primary capillary PlGF-/- endothelial cells treated with 100 ng/ml PlGF during 6 hours.

ORGANISM(S): Mus musculus

2003-05-28 | E-MEXP-6 | biostudies-arrayexpress

Microarray analysis of 2,3,7,8-Tetrachlorodibenzo-p-dioxin Exposed Amputated Adult Zebrafish Heart Ventricles

The purpose of this experiment is to understand which transcripts are differentially expressed following exposure to TCDD. We used microarrays to understand global changes in gene signal intensity Adult zebrafish (danio rerio) were injected (i.p) to vehicle control or TCDD (70 ng/g) one day prior to...

ORGANISM(S): Danio rerio

2011-11-29 | E-GEOD-33981 | biostudies-arrayexpress

The 15-min Subcellular Proteome

This project integrated data-independent acquisition (DIA) with capillary electrophoresis electrospray ionization mass spectrometry (CE-ESI-MS) to enable fast single-cell proteomics. With <15 min of effective separation time in a bottom-up proteomics setting, this technology returned ~1,200 proteins...

ORGANISM(S): Homo sapiens (Human) Xenopus laevis (African clawed frog)

2024-09-27 | PXD046467 | Pride

Prediagnostic Plasma 25-Hydroxyvitamin D and Pancreatic Cancer Survival.

Not available

S-EPMC5012662 | biostudies-literature

Identification of genes essential for Moraxella catarrhalis growth under iron-limiting conditions using Genomic Array Footprinting (GAF)

Iron-sequestration by the human host is a first line defense against respiratory pathogens like Moraxella catarrhalis, which consequently experiences a period of iron-starvation during colonization and infection. We determined the genetic requirements for M. catarrhalis growth during iron-starvation...

ORGANISM(S): Moraxella catarrhalis BBH18

2013-06-06 | E-GEOD-41546 | biostudies-arrayexpress

Capillary Electrophoresis Mass Spectrometry for Scalable Single-Cell Proteomics

This project used a custom-built capillary electrophoresis (CE) mass spectrometry (MS) platform to demonstrate the scalable analysis of proteins from single cells of varying sizes and protein content in different vertebrate biological models. Neural tissue fated giant cells were identified in cleava...

ORGANISM(S): Mus musculus (Mouse) Xenopus laevis (African clawed frog)

2022-03-02 | PXD031955 | Pride

Proteomics Capillary electrophoresis Mass spectrometry Subcellular Scalability

Long-term dynamics of bone mineral density during intermittent androgen deprivation for men with nonmetastatic, hormone-sensitive prostate cancer.

Not available

S-EPMC3383183 | biostudies-literature

Transcription profiling of human treated cord blood-derived human mast cells control and TGF-beta treated

Cord blood-derived stem cells were in vitro cultured in the presence of 40 ng/ml SCF, 20 ng/ml IL6 and 2 microM lysophosphatidic acid for 5 week. Then mast cells were magnetically isolated and further cultured for 4 days in the presence or absence of 2 ng/ml TGF-betaI. Total RNA was isolated and pro...

ORGANISM(S): Homo sapiens

2008-06-13 | E-GEOD-4906 | biostudies-arrayexpress

Large-scale Proteomics Profiling of Peripheral Blood of DM1 patients identifies biomarkers for disease severity and functional capacity

3 µl of each human serum sample was added to 40 µl lysis buffer containing 5% sodium dodecyl sulfate (SDS) and 50 mM triethylammonium bicarbonate (TEAB), pH 8.5. Proteins were reduced by addition of 15 mM dithiothreitol and incubation for 30 minutes at 55˚C and then alkylated by addition of 30 mM io...

ORGANISM(S): Homo sapiens (Human)

2026-06-26 | PXD067476 | Pride

Serum Human

Transcription profiling of mouse bone marrow macrophages from IL-6-/- and IL-10-/- mutants treated with IL-10 or IL-6 stimulation in the presence of LPS

IL-10 or IL-6 stimulation of control 129xC57BL/6 murine bone marrow derived macrophages in the presence of LPS. We used microarrays to detail the global programme of gene expression changes in response to IL-6 or IL-10 stimulation in the presence of lipopolysaccharide. BMDMs were isolated from cont...