Nielsen K L KL - OmicsDI

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Unknown (191)
Transcriptomics (47)
Metabolomics (9)
Genomics (4)
Proteomics (2)

Organisms

Homo sapiens (19)
Saccharomyces cerevisiae (13)
Mus musculus (3)
Aspergillus oryzae (2)
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (1)
Oncorhynchus nerka (1)
Aspergillus niger (1)
Bacillus thuringiensis Bt407 (1)
Bacillus thuringiensis (1)
Macaca mulatta (1)
Columba livia (1)
Mucor circinelloides (1)
Salmo salar (1)
Candida albicans (1)
Rattus norvegicus (1)
Arabidopsis thaliana (1)

Repository

biostudies-arrayexpress (51)
MetaboLights (8)
pride (2)
GNPS (1)

Tissue

Cell culture (1)
Glioblastoma multiforme cell (1)
Malignant cell (1)

Disease

Normal (1)
Alveolar soft part sarcoma (1)
Brain glioblastoma multiforme (1)

Technology Type

Mass spectrometry (7)
Mass Spectrometry (2)
Mass spectrometry assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Bottom-up proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (6)
Illumina HiSeq 2500 (2)
MinION (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
LTQ FT (1)
MaXis (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive (1)

Publication Date

2023 (9)
2013 (7)
2011 (7)
2012 (5)
2010 (5)
2009 (5)
2020 (3)
2016 (3)
2015 (3)
2014 (3)
2006 (3)
2008 (2)
2007 (2)
2018 (1)
2005 (1)
2004 (1)
2024 (1)
2025 (1)

CHEBI ID

CHEBI:16359 (3)
CHEBI:28865 (3)
CHEBI:35038 (3)
CHEBI:139138 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)
CHEBI:173703 (2)
CHEBI:182784 (2)
CHEBI:195271 (2)
CHEBI:27432 (2)
CHEBI:27997 (2)
CHEBI:30769 (2)
CHEBI:34494 (2)
CHEBI:34687 (2)
CHEBI:64563 (2)
CHEBI:73858 (2)
CHEBI:75342 (2)
CHEBI:80774 (2)
CHEBI:10136 (1)
CHEBI:116314 (1)
CHEBI:131342 (1)
CHEBI:1427 (1)
CHEBI:145227 (1)
CHEBI:15422 (1)
CHEBI:15603 (1)
CHEBI:15741 (1)
CHEBI:15781 (1)
CHEBI:15846 (1)
CHEBI:15978 (1)
CHEBI:16002 (1)

Metabolite Name

Cholic acid (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
9(10)-EpOME (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
Dibutyl phthalate (DBP) (2)
Elaidic acid (2)
Lyso-PC(16:0) (2)
Monoolein (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Succinate (2)
Taurocholic acid (2)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
1,3,5-triprop-2-enyl-1,3,5-triazaperhydroine-2,4,6-trione (1)
1,4a-dimethyl-9-oxo-7-propan-2-yl-3,4,10,10a-tetrahydro-2H-phenanthrene-1-carboxylic acid (1)
1-(9Z-Octadecenoyl)-sn-glycero-3-phosphocholine (1)
1-Heptadecanoyl-sn-glycero-3-phosphocholine (1)
1-Hexadecanoyl-sn-glycerol (1)
1-Hexadecyl-sn-glycero-3-phosphocholine (1)
1-Myristoyl-2-stearoyl-sn-glycero-3-phosphocholine (1)
1-Myristoyl-sn-glycero-3-phosphocholine (1)
1-Palmitoyl-2-myristoyl-sn-glycero-3-phosphocholine (1)
13(S)-HODE methyl ester (1)
13-Keto-9Z,11E-octadecadienoic acid (1)
16-Hydroxyhexadecanoic acid (1)
17(18)-EpETE (1)

Study type

Transcription profiling by array (32)
RNA-seq of coding RNA (7)
ChIP-seq (3)
Unknown experiment type (2)
High-throughput sequencing (2)
Two-color microarray (1)
ChIP-chip by array (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2020 (33)
2022 (27)
2021 (21)
2015 (18)
2024 (16)
2018 (14)
2023 (12)
2016 (12)
2013 (11)
2012 (10)
2011 (10)
2019 (10)
2014 (9)
2010 (8)
2025 (7)
2017 (7)
2009 (5)
2008 (3)
2006 (3)
2007 (2)
2026 (2)
2005 (1)
2004 (1)

Lab affiliation

Biological Engineering, MIT (1)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada (1)

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Transcription profiling of yeast under conditions of ammonium, L-alanine or L-glutamine limitation

Response of Saccharomyces cerevisiae to Ammonium, L-alanine, or L-glutamine Limitation. The protrotophic laboratory strain CEN.PK113-7D (MAT a) was grown in laboratory fermentors with a working volume of 1 litre at dilution rate (D) of 0.20 per hour (in triplicate for each nitrogen limited condition...

ORGANISM(S): Saccharomyces cerevisiae

2006-06-13 | E-MEXP-724 | biostudies-arrayexpress

Expression data of beta-subunit of Snf1 kinase in yeast Saccharomyces cerevisiae

The conserved Snf1/AMPK (AMP-activated protein Kinase) family is one of the central components in nutrient sensing and regulation of carbon metabolism in eukaryotes. It is also involved in several other processes such as stress resistance, invasive growth and ageing. Snf1 kinase is composed of a cat...

ORGANISM(S): Saccharomyces cerevisiae

2010-05-27 | E-GEOD-20591 | biostudies-arrayexpress

Regulatory T cells promote endurance exercise adaptation by shielding muscle mitochondria from damage

Exercise enhances physical performance and reduces the risk of many disorders such as cardiovascular disease, type 2 diabetes, dementia and cancer. Exercise characteristically incites an inflammatory response, notably in skeletal muscles. While some effector mechanisms have been identified, regul...

2023-10-10 | MTBLS8391 | MetaboLights

iRNA-seq: Computational method for genome wide assessment of acute transcriptional regulation from total RNA-seq data

RNA-seq is a sensitive and accurate technique to compare steady state levels of RNA between different cellular states. However, as it does not provide an account of transcriptional activity per se, other technologies are needed to more precisely determine acute transcriptional responses. Here, we ha...

ORGANISM(S): Homo sapiens

2015-02-04 | E-GEOD-60462 | biostudies-arrayexpress

Detection of predicted small RNA of Legionella pneumophila

Legionella pneumophila is a gram-negative opportunistic human pathogen that infects and multiplies in a broad range of phagocytic protozoan and mammalian phagocytes. Based on the observation that small regulatory RNAs (sRNAs) play an important role in controlling virulence-related genes in several p...

ORGANISM(S): Legionella pneumophila subsp. pneumophila str. Philadelphia 1

2010-06-24 | E-GEOD-19196 | biostudies-arrayexpress

Antibiotic tolerance and persistence in clinical isolates of <i>Escherichia coli</i> evaluated by high-resolution time-kill assays.

Not available

S-EPMC12403604 | biostudies-literature

Studies on the production of fungal polyketides in Aspergillus nidulans using systems biology tools

Using genetic engineering tools available for the model organism Aspergillus nidulans, we constructed two recombinant strains; one expressing the model polyketide Penicillium griseofulvum 6-methylsalicylic acid (6-MSA) polyketide synthase gene, and one expressing the 6-MSA gene and overexpressing th...

ORGANISM(S): Emericella nidulans

2009-02-27 | E-GEOD-12859 | biostudies-arrayexpress

Glutamine methylation on Histone H2A is an RNA Polymerase I dedicated modification

Nucleosomes are decorated with numerous post-translational modifications capable of influencing many DNA processes. Here, we describe a new class of modification, methylation of glutamine, occurring on yeast histone H2A at position 105 (Q105) and human H2A at Q104. We identify Nop1 as the methyltran...

ORGANISM(S): Saccharomyces cerevisiae

2014-01-21 | E-MTAB-1447 | biostudies-arrayexpress

DNA Damage Repair and Drug Efflux as Potential Targets for Reversing Low or Intermediate Ciprofloxacin Resistance in E. coli K-12.

Not available

S-EPMC6036142 | biostudies-literature

Transcription profiling of Arabidopsis mkk1, mkk2 and mkk1/2 knockout treated with the saliicylic acid analog BTH

Gene Expression profiling of the Arabidopsis thaliana MAP Kinase Kinases 1 (mkk1), MAP Kinase Kinases 2 (mkk2) knockout mutants and the double mutant mkk1/mkk2 before and 24 hours after treatment with the salicylic acid analog BTH, was measured by hybridisation to an Affymetrix ATH1 GeneChip. Experi...

ORGANISM(S): Arabidopsis thaliana

2008-06-11 | E-GEOD-10646 | biostudies-arrayexpress

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