Nlk - OmicsDI

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Transcriptomics (3988)
Genomics (898)
Proteomics (322)
Multiomics (181)
Unknown (93)
Other (64)
Metabolomics (31)
Models (3)
Methylation profiling (1)

Organisms

Homo sapiens (1363)
Mus musculus (1316)
Caenorhabditis elegans (250)
Arabidopsis thaliana (216)
Saccharomyces cerevisiae (119)
Danio rerio (97)
Rattus norvegicus (93)
Drosophila melanogaster (81)
Zea mays (62)
Gallus gallus (39)
Hordeum vulgare (37)
Bos taurus (35)
Sus scrofa (33)
Vitis vinifera (27)
Glycine max (25)
Medicago truncatula (20)
Triticum aestivum (20)
Candida albicans (20)
Dictyostelium discoideum (19)
Aspergillus fumigatus (19)
Mycobacterium tuberculosis H37Rv (17)
Pseudomonas aeruginosa (17)
Oryza sativa (17)
Schizosaccharomyces pombe (16)
Escherichia coli (16)
Solanum lycopersicum (15)
Ovis aries (15)
Staphylococcus aureus (14)
Solanum tuberosum (14)
Oryza sativa Japonica Group (13)

Organisms

Mus musculus (4)
Homo sapiens (3)

Repository

biostudies-arrayexpress (4744)
MassIVE (204)
LINCS (189)
EGA (137)
PAXDB (91)
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pride (2)
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MetabolomicsWorkbench (1)

Tissue

Eye tissue (1)
Cell culture (1)
T cell (1)

Disease

Normal (12)
Cancer (2)
Neuroblastoma (2)
Blast crisis (1)
Inoculated with P. syringae pv. tomato strain DC3000 + avrRps4 (1)
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Uninjured (1)
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Active Crohn's disease (1)
N/A (culture-derived) (1)
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Kaposi's sarcoma (1)
Dystrophic (1)
Infected (1)

Technology Type

Fluorescence intensity (186)
KINOMEscan (182)
Mass spectrometry (23)
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QPCR (3)
Mass Spectrometry (3)
Illumina HiSeq 2500, ILLUMINA (2)
Illumina HiSeq 2000 (2)
Illumina HiSeq 2000, ILLUMINA (2)
Illumina Cardio-MetaboChip (1)
Illumina HumanCoreExome-12v1-0, Illumina HumanCoreExome-12v1-1, Illumina HumanCoreExome-24v1-0 (1)
Illumina HiSeq 2500, ILLUMINA, Illumina MiSeq (1)
ZCall, HumanExome_12v1.1_A -GenCall (1)
HumanOmniExpress-12 v1.1 BeadChip-GenCall (1)
Illumina MiSeq (1)
NMR spectroscopy (1)
ESI (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Gel-based experiment (1)

Instrument Platform

Illumina NovaSeq 6000 (153)
Illumina HiSeq 2000 (96)
Illumina HiSeq 2500 (85)
Illumina HiSeq 4000 (82)
NextSeq 500 (67)
NextSeq 2000 (20)
Illumina MiSeq (18)
Illumina HiSeq 1500 (14)
NextSeq 550 (11)
ScanArray [PerkinElmer] (10)
Illumina Genome Analyzer II (8)
Illumina NovaSeq X (8)
Illumina HiSeq 3000 (7)
Agilent 2100 Bioanalyzer (6)
GenePix 4000A [Axon Instruments] (6)
Illumina Genome Analyzer IIx (6)
Axon- GenePix4000B (6)
AB SOLiD 4 System (5)
Generation III Array Scanner [Amersham] (5)
418 [Affymetrix] (5)
GenePix 4000B [Axon Instruments] (5)
Scanning hardware (5)
Illumina HiSeq 1000 (5)
Single cells were captured using the 10x Genomics Chromium Controller. (4)
PromethION (3)
Illumina Genome Analyzer (3)
GenePix Professional 4200A [Axon Instruments] (3)
Other (3)
ScanArray 6000 [Perkin Elmer] (3)
NA (3)

Publication Date

2016 (749)
2010 (592)
2013 (519)
2011 (509)
2014 (501)
2012 (477)
2015 (441)
2009 (186)
2008 (178)
2020 (166)
2021 (118)
2025 (103)
2023 (100)
2022 (97)
2018 (94)
2024 (87)
2017 (83)
2019 (75)
2007 (68)
2026 (60)
2005 (42)
2006 (26)
2004 (9)
2002 (5)
2027 (1)

UNIPROT ID/AC

14310_ARATH (3)
14311_ARATH (3)
14332_ARATH (3)
14333_ARATH (3)
14334_ARATH (3)
14335_ARATH (3)
14336_ARATH (3)
14337_ARATH (3)
14338_ARATH (3)
14339_ARATH (3)
1433B_HUMAN (3)
1433E_HUMAN (3)
1433F_HUMAN (3)
1433G_HUMAN (3)
1433S_HUMAN (3)
1433T_HUMAN (3)
1433Z_HUMAN (3)
1A112_ARATH (3)
2A5A_ARATH (3)
2A5B_ARATH (3)
2A5D_HUMAN (3)
2A5E_HUMAN (3)
2A5G_ARATH (3)
2A5G_HUMAN (3)
2AAA_ARATH (3)
2AAA_HUMAN (3)
2AAB_ARATH (3)
2AAB_HUMAN (3)
2AAG_ARATH (3)
2AB2A_ARATH (3)

CHEBI ID

CHEBI:27266 (9)
CHEBI:16449 (9)
CHEBI:16737 (9)
CHEBI:17822 (8)
CHEBI:26271 (8)
CHEBI:25094 (8)
CHEBI:22660 (8)
CHEBI:27570 (8)
CHEBI:18186 (8)
CHEBI:16811 (8)
CHEBI:25017 (8)
CHEBI:15428 (8)
CHEBI:28044 (8)
CHEBI:37024 (8)
CHEBI:29016 (8)
CHEBI:27897 (8)
CHEBI:18095 (7)
CHEBI:64433 (7)
CHEBI:66857 (7)
CHEBI:64516 (7)
CHEBI:64517 (7)
CHEBI:66848 (7)
CHEBI:66849 (7)
CHEBI:66850 (7)
CHEBI:65303 (7)
CHEBI:18237 (7)
CHEBI:22653 (7)
CHEBI:26986 (7)
CHEBI:28300 (7)
CHEBI:18257 (7)

Metabolite Name

Taurine (5)
Alanine (4)
Carnosine (4)
Dopamine (4)
Serotonin (4)
Spermidine (4)
Histamine (4)
Riboflavin (4)
Creatinine (4)
Total DMA (3)
T4-OH-Pro (3)
PEA (3)
Nitro-Tyr (3)
Met-SO (3)
C4-OH-Pro (3)
Alpha-AAA (3)
Ac-Orn (3)
Orn (3)
Cit (3)
DOPA (3)
Val (3)
Tyr (3)
Trp (3)
Thr (3)
Ser (3)
Pro (3)
Phe (3)
Met (3)
Lys (3)
Leu (3)

First Public Date

2026 (3)
2022 (2)
2021 (2)
2025 (1)
2023 (1)
2020 (1)

Study type

Transcription profiling by array (2399)
RNA-seq of coding RNA (658)
ChIP-seq (637)
RNA-seq of non coding RNA (184)
ChIP-chip by tiling array (140)
Comparative genomic hybridization by array (120)
Methylation profiling by high throughput sequencing (71)
Unknown experiment type (67)
RNA-seq of coding RNA from single cells (64)
Methylation profiling by array (46)
Other (45)
DNA-seq (25)
RNA-seq of total RNA (24)
Genotyping by array (23)
ATAC-seq (21)
Cell line - High-throughput sequencing (20)
ChIP-chip by array (20)
Transcription profiling by tiling array (19)
Animal - High-throughput sequencing (11)
Animal - One-color microarray (9)
MicroRNA profiling by array (9)
CUT&RUN (9)
Plant - High-throughput sequencing (7)
Single nucleus RNA sequencing (7)
Proteomic profiling by array (7)
Transcription profiling by SAGE (6)
High-throughput sequencing (6)
RNAi profiling by array (6)
Spatial transcriptomics by high-throughput sequencing (6)
Genotyping by high throughput sequencing (6)

Release Date

2016 (674)
2010 (596)
2013 (520)
2011 (511)
2014 (499)
2012 (481)
2015 (346)
2009 (187)
2008 (180)
2018 (89)
2021 (88)
2025 (77)
2022 (75)
2007 (69)
2023 (64)
2024 (61)
2020 (61)
2019 (59)
2026 (54)
2017 (54)
2005 (43)
2006 (27)
2004 (9)
2002 (5)
1998 (1)

Lab affiliation

Center for Molecular Medicine & Division of Pediatrics, Regenerative Medicine Center, University Medical Centre Utrecht, Utrecht University, Utrecht, The Netherlands (1)
State Key Laboratory of Medical Molecular Biology, Institute of Basic Medical Sciences Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing 100005, China (1)

Tags

xref:PubMed:37384409 (1)
xref:PubMed:41922900 (1)
xref:PubMed:33542078 (1)
xref:PubMed:42572590 (1)
xref:PubMed:36250966 (1)

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RNA seq-NLK S385A vs NLK S385D

PRJNA1178366 | ENA

The phosphorylation of the Smad2/3 linker region by Nemo-like kinase regulates TGF-β signaling

Smad2 and Smad3 (Smad2/3) primarily mediates the transforming growth factor-β (TGF-β) signaling that drives cell proliferation, differentiation, and migration. The dynamics of the Smad2/3 phosphorylation provides the key mechanism for regulating the TGF-β signaling pathway. Here we identified NLK as...

ORGANISM(S): Homo sapiens (Human)

2021-09-10 | PXD023957 | Pride