Non-cell autonomous

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Unknown (1827)
Transcriptomics (1538)
Genomics (660)
Proteomics (79)
Metabolomics (18)
Other (17)
Methylation profiling (2)
Models (1)

Organisms

Mus musculus (567)
Homo sapiens (433)
Drosophila melanogaster (371)
Saccharomyces cerevisiae (62)
Arabidopsis thaliana (41)
Caenorhabditis elegans (24)
Rattus norvegicus (21)
Streptomyces coelicolor (18)
Danio rerio (16)
Schizosaccharomyces pombe (10)
Apis mellifera (9)
Xenopus laevis (8)
Bacillus subtilis (7)
Nicotiana tabacum (6)
Staphylococcus aureus (4)
Dictyostelium discoideum (4)
Zea mays (4)
Gallus gallus (4)
Methanococcus maripaludis S2 (3)
Toxoplasma gondii (3)
Escherichia coli (3)
Escherichia coli str. K-12 substr. MG1655 (3)
Escherichia coli CFT073 (2)
Papio anubis (2)
Ostreococcus tauri (2)
Callithrix jacchus (2)
Podospora anserina (2)
Porphyromonas gingivalis (2)
Helicobacter pylori (2)
mixed sample (2)

Organisms

Mus musculus (250)
Homo sapiens (114)
Drosophila melanogaster (14)
Arabidopsis thaliana (13)
Caenorhabditis elegans (11)
Danio rerio (7)
Rattus norvegicus (4)
Capsella rubella (3)
canine metagenome (2)
Xenopus laevis (2)
Capra hircus (2)
Dictyostelium discoideum (1)
Cuscuta campestris (1)
Canis lupus familiaris (1)
Zea mays (1)
Cucumis sativus (1)
Gallus gallus (1)
Bombyx mori (1)
Bos taurus (1)
Saccharomyces cerevisiae (1)

Repository

biostudies-arrayexpress (1315)
ENA (482)
geo (416)
pride (40)
MassIVE (25)
MetaboLights (18)
EGA (8)
jPOST (6)
GPMDB (2)
iProX (2)
BioModels (1)

Tissue

Cell culture (8)
Fibroblast (5)
Brain (5)
Macrophage (3)
Astrocyte (2)
Leukocyte (2)
Microglial cell (2)
Cell suspension culture (2)
Colon (2)
Lung (2)
Pancreas (2)
Epithelial cell (2)
Choroid plexus (1)
Rostral migratory stream (1)
Subventricular zone (1)
SCHNEIDER-2 cell (1)
Visual cortex (1)
Femur (1)
Stromal cell (1)
Myeloid leukocyte (1)
Astrocyte of the cerebral cortex (1)
Myoblast (1)
Tibia (1)
Stromal cell of bone marrow (1)
Pancreatic ductal cell (1)
Neuron (1)
Neural progenitor cell (1)
Primary cell (1)
Cerebral cortex neuron (1)
Early embryonic cell (1)

Disease

Normal (3)
Acute leukemia (3)
Colorectal cancer (2)
Colon cancer (2)
Breast cancer (2)
Not Available (2)
XCGD (1)
Early stage liver carcinogenesis (1)
Lymphoblastic leukemia (1)
Peripheral neuropathy (1)
Angioimmunoblastic T-cell lymphoma (1)
Post-stasis (1)
Papillary Carcinoma (1)
Neuroepithelioma (1)
Giant cell glioblastoma (1)
Colorectal carcinoma (1)
Nevus (1)
Melanoma (1)
Non-small cell lung carcinoma (1)
Lung squamous cell carcinoma (1)
Ovarian cancer (1)
Progressive myoclonus epilepsy 1A (1)
Progressive myoclonus epilepsy (1)
Frontotemporal dementia and/or amyotrophic lateral sclerosis 6 (1)
Multiple sclerosis (1)
Brain glioblastoma multiforme (1)
Chronic lymphocytic leukemia (1)
Lung adenocarcinoma (1)
Acute myeloid leukemia (1)
Pancreatic ductal adenocarcinoma (1)

Technology Type

Mass Spectrometry (40)
Shotgun proteomics (30)
Mass spectrometry (14)
Mass spectrometry assay (4)
Bottom-up proteomics (4)
Data-independent acquisition (4)
Gel-based experiment (3)
Data-dependent acquisition (3)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, ILLUMINA (1)
DiaPASEF (1)

Instrument Platform

Illumina NovaSeq 6000 (18)
Axon GenePix 4000B scanning hardware (9)
Illumina HiSeq 4000 (8)
NextSeq 500 (8)
Illumina HiSeq 2000 (6)
Illumina HiSeq 2500 (4)
Illumina Genome Analyzer IIx (2)
NA (2)
Qiagen RNEasy Mini ki (1)
BD FACSAriaIIu cell sorter (1)
Poly-T oligo-attached magnetic beads (1)
Microcentrifuge (1)
MoFlo Legacy cell sorter (Beckman Coulter) (1)
PC (1)
ScanArray scanning hardware (1)
Affymetrix GeneChip Scanner 3000 (1)
AB SOLiD 4 System (1)
AB SOLiD System 3.0 (1)
ScanArray 5000 [PerkinElmer] (1)
G2565AA DNA microarray scanner [Agilent] (1)
Agilent microarray scanner (1)
Axon- GenePix4000B (1)
418 [Affymetrix] (1)
ScanArray 4000XL [PerkinElmer] (1)
Illumina NovaSeq X (1)
Illumina HiSeq X (1)
10x Genomics Chromium Controller (1)
MinION (1)
BGISEQ-500 (1)
Illumina MiSeq (1)

Publication Date

2013 (283)
2011 (220)
2010 (198)
2015 (111)
2014 (111)
2008 (98)
2012 (95)
2016 (91)
2026 (77)
2025 (76)
2022 (61)
2021 (54)
2023 (51)
2024 (47)
2007 (45)
2020 (44)
2009 (44)
2019 (32)
2018 (29)
2017 (25)
2005 (11)
2004 (9)
2006 (6)
2002 (2)
2003 (1)

CHEBI ID

CHEBI:17775 (7)
CHEBI:15354 (7)
CHEBI:16919 (7)
CHEBI:18211 (7)
CHEBI:16708 (7)
CHEBI:17750 (7)
CHEBI:28300 (7)
CHEBI:29016 (7)
CHEBI:27897 (7)
CHEBI:16235 (7)
CHEBI:16335 (7)
CHEBI:24741 (6)
CHEBI:17755 (6)
CHEBI:18066 (6)
CHEBI:16908 (6)
CHEBI:59783 (6)
CHEBI:27570 (6)
CHEBI:18237 (6)
CHEBI:22660 (6)
CHEBI:17562 (6)
CHEBI:15676 (6)
CHEBI:17154 (6)
CHEBI:37024 (6)
CHEBI:17084 (6)
CHEBI:30915 (6)
CHEBI:32816 (6)
CHEBI:16737 (6)
CHEBI:16695 (6)
CHEBI:44897 (6)
CHEBI:15846 (6)

Metabolite Name

ADP (6)
NAD+ (5)
FAD (5)
UMP (5)
Choline (5)
Adenosine (5)
Xanthine (5)
Pantothenate (4)
CDP (4)
ATP (4)
NADH (4)
CMP (4)
3'-AMP (4)
Glycocholic acid (4)
L-Tyrosine (4)
Creatine (4)
Methionine (4)
Hypoxanthine (4)
Creatinine (4)
Guanine (4)
Adenine (4)
Pyruvate (4)
Malate (4)
Lactate (4)
Citrate (4)
AMP (4)
Uridine (4)
Trehalose 6-phosphate (3)
N-Acetylaspartate (3)
Adenosine 3',5'-diphosphate (3)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

First Public Date

2026 (80)
2025 (62)
2024 (60)
2022 (46)
2023 (41)
2021 (41)
2014 (41)
2020 (36)
2016 (18)
2019 (16)
2018 (15)
2017 (11)
2015 (10)
2013 (5)

Classification

protozoa (1)

Modification

Not available (1)

Study type

Transcription profiling by array (619)
ChIP-chip by tiling array (300)
ChIP-seq (112)
RNA-seq of coding RNA (101)
Unknown experiment type (54)
Other (35)
Comparative genomic hybridization by array (20)
RNA-seq of non coding RNA (10)
ChIP-chip by array (9)
MicroRNA profiling by array (8)
RNA-seq of coding RNA from single cells (8)
Genotyping by array (5)
Methylation profiling by array (5)
Transcription profiling by tiling array (4)
Transcription profiling by SAGE (3)
Cell line - One-color microarray (3)
Proteomic profiling by array (3)
Methylation profiling by high throughput sequencing (3)
MNase-seq (2)
Plant - High-throughput sequencing (2)
RNA-seq of total RNA (2)
GRO-seq (1)
Animal - One-color microarray (1)
Human - High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Trajectory (1)
RNAi profiling by array (1)

Release Date

2013 (312)
2011 (242)
2010 (224)
2022 (188)
2023 (187)
2021 (186)
2015 (176)
2025 (175)
2014 (175)
2024 (169)
2016 (158)
2020 (149)
2018 (132)
2019 (130)
2012 (127)
2008 (112)
2017 (102)
2009 (66)
2007 (50)
2026 (33)
2006 (14)
2005 (13)
2004 (10)
2002 (3)
2001 (2)
2000 (2)
2003 (1)
1998 (1)
1997 (1)
1994 (1)

Lab affiliation

Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and Signalling Research Centres BIOSS and CIBSS, University of Freiburg, 79104 Freiburg im Breisgau, Germany (2)
Institute of Biochemistry II, Faculty of Medicine, Goethe University, Frankfurt, Germany (2)
Head of the Curie Institute Mass Spectrometry Platform (2)
Developmental Neurobiology, Max Planck Institute of Psychiatry, Munich, Germany (1)
Wellcome Trust/ MRC Cambridge Stem Cell Institute & Department of Haematology, Univeristy of Cambridge, Cambridge, UK. (1)
Quantitative proteomics and metabolomics Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association Hannoversche Str. 28, 10115 Berlin (1)
Center of Genomics Sciences/National Autonomous University of Mexico (1)
Proteomics Unit Spanish National Cancer Research Center (CNIO) (1)
Department of Physiology, Department of Neurobiology, University of California Los Angeles. Los Angeles, CA 90095-1751, USA (1)
The Francis Crick Institute, London (1)
Laboratory of Molecular Bases of Aging Nencki Institute of Experimental Biology (1)
i3S - Instituto de Investigação e Inovação em Saúde IPATIMUP - Institute of Molecular Pathology and Immunology of the University of Porto (1)
Experimental Systems Immunology Laboratory, Max Planck Institute of Biochemistry, Martinsried, Germany Institute of Innate Immunity, Department of Systems Immunology and Proteomics, Medical Faculty, University of Bonn, Germany (lab head) (1)
CRG, UPF (1)
Bram Snijders Head of Mass Spectrometry Proteomics Platform The Francis Crick Institute 1 Midland Road London NW1 1AT T: +442037962038 E: bram.snijders@crick.ac.uk W: https://crims.crick.ac.uk/ (1)
Director, Dept of Proteomics and Signal Transduction Max Planck Institute of Biochemistry (1)
Department of Biotechnology and Biomedicine, Technical University of Denmark (1)
Simon Fraser University, Canada's Michael Smith Genome Sciences Centre (1)
Molecular NeuroTherapeutics Laboratory Department of Neuroscienc Mayo Clinic Florida 4500 San Pablo Rd Jacksonville, FL 32224, USA (1)
Leibniz-Forschungsinstitut für Molekulare Pharmakologie (1)
Janusz Rak MD, PhD Jack Cole Chair in Pediatric Hematology/Oncology Professor, Department of Pediatrics McGill University The Research Institute of the McGill University Health Centre Montreal Children's Hospital 1001 Decarie Blvd, Office # E M1 2244 Montreal, Quebec, H4A 3J1 Phone: (514) 412-4400 ext-office: 76240; -lab: 76220; Fax (514) 412-4331 (1)
IST (Institute of Science and Technology) Austria, Klosterneuburg, Lower Austria, Austria (1)
Genetics and Biochemistry Branch, NIDDK, National Institutes of Health, Bethesda, MD 20814, USA.  National Institute of Neurological Disorders and Stroke (NINDS), National Institutes of Health, Bethesda, MD, USA (1)
Marseille Proteomics, CRCM, Inserm UMR1068, CNRS UMR7258, Aix Marseille Université U105, Institut Paoli Calmettes (1)
Experimental Systems Immunology Laboratory, Max Planck Institute of Biochemistry, Martinsried, Germany Institute of Innate Immunity, Department of Systems Immunology and Proteomics, Medical Faculty, University of Bonn, Germany (1)
Page and William Black Professor of Neurology Vice-Chair, Research Chief, Movement Disorders Division Director, Columbia Translational Neuroscience Initiative Co-Director, Center for Motor Neuron Biology and Disease Co-Director, Thompson Family Foundation Initiativ Departments of Neurology, Pathology & Cell Biology and Neuroscience College of Physicians and Surgeons, Room 5-420 630 West 168th Street Columbia University New York, NY 10032 Phone: 212-342-4119 Fax: 212-342-4512 (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich (TUM), Freising, Germany (1)
The Francis Crick Institute, London, UK Department of Neuromuscular Diseases, University College London, UK National Hospital for Neurology and Neurosurgery, UCL NHS Foundation Trust, London, UK (1)
Molecular Genetics, Technical University Kaiserslautern (1)
Dept. of Orthopaedics and Traumatology The Chinese University of Hong Kong, Hong Kong, China (1)

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