Non-coding variants

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Organisms

Homo sapiens (327)
Mus musculus (80)
Arabidopsis thaliana (5)
Caenorhabditis elegans (4)
synthetic construct (3)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (2)
Brassica napus (2)
Sus scrofa (2)
Drosophila melanogaster (2)
Rattus norvegicus (2)
Saccharomyces cerevisiae (2)
Human alphaherpesvirus 1 (1)
Oryctolagus cuniculus cuniculus (1)
Myodes glareolus (1)
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unidentified (1)
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Disease

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Illumina HiSeq 2000 (19)
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Instrument (375)
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- (5)
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Illumina (1)

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2013 (28)
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2005 (1)

UNIPROT ID/AC

IGSF2_MOUSE (1)
TMM52_MOUSE (1)
MCIN_MOUSE (1)
ELF5_MOUSE (1)
IL12A_MOUSE (1)
CXA10_MOUSE (1)
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10090.ENSMUSP00000137545 (1)
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PTHD3_MOUSE (1)
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SOCS3_MOUSE (1)

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2026 (89)
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2020 (44)
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2019 (30)
2014 (30)
2013 (27)
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2017 (24)
2018 (22)
2015 (19)
2012 (1)

Classification

bacteria (2)
viruses (1)

Study type

Transcription profiling by array (53)
RNA-seq of coding RNA (52)
RNA-seq of non coding RNA (21)
ChIP-seq (18)
Transcription profiling by tiling array (8)
Other (8)
Comparative genomic hybridization by array (5)
Genotyping by array (4)
DNA-seq (4)
RNA-seq of total RNA (2)
Unknown experiment type (1)
Animal - One-color microarray (1)
Human - Methylation microarray (1)
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Capture-C (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2021 (290)
2022 (288)
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2024 (235)
2020 (234)
2019 (208)
2018 (195)
2017 (175)
2016 (173)
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2011 (79)
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2008 (21)
2006 (12)
2005 (7)
2003 (6)
2002 (2)
2004 (1)
2000 (1)

Lab affiliation

EMBL-EBI (2)
University of Wisconsin Madison (2)
National Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, China (1)
Laboratory of Toxinology, Oswaldo Cruz Institute, Fiocruz, Rio de Janeiro, RJ, Brazil (1)
Laboratoire de Génétique Ophtalmologique, INSERM U1163, Institut Imagine, Paris, France (1)
1.Department of Medical Oncology, Inselspital, Bern University Hospital, University of Bern, 3010 Bern, Switzerland. 2.Department for BioMedical Research, University of Bern, 3008 Bern, Switzerland. 3. Conway Institute for Biomolecular and Biomedical Research, University College Dublin, Dublin D04 V1W8, Ireland. (1)
St. Anna Children's Cancer Research Institute (CCRI), Vienna, Austria; CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria. (1)
Department of Technology, Proteomics, UNESP, Brazil (1)
Department of Biochemical and Biotechnological Sciences, University of Catania, Italy (1)
Laboratory of Transcriptional Networks; Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy (1)
Laboratory of Systems Biology and Genetics, Institute of Bioengineering, School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland (1)
733 N. Broadway Miller Research Building room 527 Johns Hopkins University Baltimore, MD 21205 (1)
Department of Clinical Pharmacy, University of Michigan (1)
Peter A. Nigrovic, MD Chief, Division of Immunology, Boston Children’s Hospital Professor of Pediatrics and Medicine (1)
Additional Professor and Head Department of Biotechnology, Ail India institute of Medical Sciences New Delhi -110029 (1)
1 German Cancer Consortium of Translational Cancer Research (DKTK) and German Cancer Research Center (DKFZ), Heidelberg, Germany 2 IIIrd Medical Department, Klinikum rechts der Isar, School of Medicine, Technical University of Munich, Munich, Germany 3 Center for Translational Cancer Research (TranslaTUM), School of Medicine, Technical University of Munich, Munich, Germany (1)
Group Leader, Cellular Immunology International Centre for Genetic Engineering and Biotechnology ICGEB Campus Aruna Asaf Ali Marg 110 067 New Delhi, INDIA (1)
Division of Molecular Genetics, Oncode Institute, The Netherlands Cancer Institute, 1066 CX Amsterdam, The Netherlands; (1)
National Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University,China (1)
Department of Medical BioSciences, Radboud University Medical Center, Nijmegen 6525 GA, The Netherlands. (1)
Chair, Quantitative Proteomics Director, Proteome Center Tuebingen Interfaculty Institute for Cell Biology University of Tuebingen Auf der Morgenstelle 15 72076 Tuebingen Germany (1)
Cancer Science Institute of Singapore, National University of Singapore (1)
Harry Perkins Institute of Medical Research and ARC Centre of Excellence in Synthetic Biology, QEII Medical Centre, Nedlands, Western Australia 6009, Australia (1)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands. (1)
Chair of Proteomics and Bioanalytics, Technische Universität München, Germany (1)
Technical University of Munich, School of Medicine, Institute of Virology, 81675 Munich, Germany (1)
Core Facility for Mass Spectrometry and Proteomics, Center for Molecular Biology of Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany (1)

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pathogen (3)
pathogen:bacterium (2)
covid19 (1)
pathogen:virus (1)

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Non-coding RNA tiling array in rice

The 1 Mb tiling array was used to represent the 10.0 Mb to 11.0 Mb region of japonica rice Chromosome 10. A tile path was designed with 36-mer probes at a step of 5 nt. All 388,994 probes were retained and synthesized into a single array. This array was hybridized to the cDNA target used for the ful...

ORGANISM(S): Oryza sativa

2010-06-11 | E-GEOD-6922 | biostudies-arrayexpress

Functional analysis of somatic variants found in endometrial tumor-specific ER-alpha enhancers

Biological implications of healthy- and tumor-specific ERα cistromes in endometrial tumors have largely been understudied. Moreover, the functional impact of non-coding somatic variants has commonly been underexplored and remained elusive. This study is aimed to provide functional interpretation of ...

ORGANISM(S): Homo sapiens (Human)

2025-04-15 | PXD029822 | Pride

Transcriptome sequencing of a large human family identifies the impact of rare non-coding variants

We have combined high-quality genome sequencing and RNA-sequencing data within a 17-individual, three generation family. Using these data, we have contrasted cis-acting expression, allele-specific expression and splicing quantitative trait loci (collectively termed eQTLs) within the family to eQTLs ...

ORGANISM(S): Homo sapiens

2014-09-01 | E-GEOD-56961 | biostudies-arrayexpress

Mapping functional non-coding variation in individual human genomes through haplotyping, multiomics, and deep learning

Most genetic variants in the human genome reside in non-coding regions, where they can perturb regulatory elements, influence gene expression, and contribute to various phenotypes and diseases. However, identifying such functionally relevant genetic variation remains challenging. Here we integrate p...

ORGANISM(S): Homo sapiens (Human)

2026-04-22 | PXD069116 | Pride

Lc-msms Non-coding variants Deep learning

Non-Coding Variants in Cancer: Mechanistic Insights and Clinical Potential for Personalized Medicine.

Not available

S-EPMC8395730 | biostudies-literature

Massively parallel functional dissection of schizophrenia associated non-coding genetic variants [MPRA]

PRJNA937666 | ENA

Massively parallel functional dissection of schizophrenia associated non-coding genetic variants [ATAC-seq]

PRJNA937665 | ENA

Massively parallel functional dissection of schizophrenia associated non-coding genetic variants [scRNA-seq]

PRJNA937667 | ENA